Search Results - "Nymeyer, H."

479 A retrospective review of 23 cases of pyoderma gangrenosum: Effects of comorbid conditions on treatment response by Nymeyer, H., Wong, H.K.

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Simulation of the Folding Equilibrium of α-Helical Peptides: A Comparison of the Generalized Born Approximation with Explicit Solvent by Nymeyer, Hugh, García, Angel E.

“…We compare simulations using the generalized Born/surface area (GB/SA) implicit solvent model with simulations using explicit solvent (transferable…”
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Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins by Clementi, Cecilia, Nymeyer, Hugh, Onuchic, José Nelson

“…Recent experimental results suggest that the native fold, or topology, plays a primary role in determining the structure of the transition state ensemble, at…”
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Folding is not required for bilayer insertion: Replica exchange simulations of an α-helical peptide with an explicit lipid bilayer by Nymeyer, Hugh, Woolf, Thomas B., Garcia, Angel E.

“…We implement the replica exchange molecular dynamics algorithm to study the interactions of a model peptide (WALP‐16) with an explicitly represented DPPC…”
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Peptide folding simulations by Gnanakaran, S, Nymeyer, Hugh, Portman, John, Sanbonmatsu, Kevin Y, Garcı́a, Angel E

“…Developments in the design of small peptides that mimic proteins in complexity, recent advances in nanosecond time-resolved spectroscopy methods to study…”
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Electronic properties of the liquid alloys AlCa and AlBa by Zuo, D., Vos, T., Nymeyer, H., Reynolds, L., Schnyders, H.S., VanZytveld, J.B.

“…The electrical resistivity, ϱ, its temperature dependence, α (≠ (1/ϱ)/(dϱ/dT)), and thethermopower, S, of the liquid alloys AlCa and AlBa were measured over…”
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Folding Funnels and Frustration in Off-Lattice Minimalist Protein Landscapes by Nymeyer, Hugh, Garcia, Angel E., Onuchic, Jose Nelson

“…A full quantitative understanding of the protein folding problem is now becoming possible with the help of the energy landscape theory and the protein folding…”
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Landscape Approaches for Determining the Ensemble of Folding Transition States: Success and Failure Hinge on the Degree of Frustration by Nymeyer, Hugh, Socci, Nicholas D., Onuchic, Jose Nelson

“…We present a method for determining structural properties of the ensemble of folding transition states from protein simulations. This method relies on…”
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Effects of positive-ion resonances in photoionization of neutral atoms by Haan, SL, Bolt, M, Nymeyer, H, Grobe, R

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Specific and nonspecific collapse in protein folding funnels by Chahine, Jorge, Nymeyer, Hugh, Leite, Vitor B P, Socci, Nicholas D, Onuchic, José Nelson

“…Experiments with fast folding proteins are beginning to address the relationship between collapse and folding. We investigate how different scenarios for…”
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Decalcification by vacuum method by NYMEYER, H J

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Protection by acetylsalicylic acid and other agents in experimental acute interstitial pneumonia of calves by Eyre, P, Nymeyer, D H, McCraw, B M, Deline, T R

“…In experimental acute interstitial pneumonia caused by Ascaris suum, therapy with aspirin (acetylsalicylic acid) provided symptomatic control of the condition,…”
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Exploring the protein folding funnel landscape by Socci, Nicholas D., Nymeyer, Hugh, Onuchic, JoséNelson

“…Energy landscape ideas have proved extremely useful in the understanding of the protein folding process. The central idea is that folding can be described as…”
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The energy landscape theory of protein folding: Insights into folding mechanisms and scenarios by Nelson Onuchic, José, Nymeyer, Hugh, García, Angel E., Chahine, Jorge, Socci, Nicholas D.

“…This chapter presents an overview of the theoretical aspects of the “new view” of protein folding based on the energy landscape theory and the funnel concept…”
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Data-Driven Time-Parallelization in the AFM Simulation of Proteins by Ji, L., Nymeyer, H., Srinivasan, A., Yu, Y.

“…Molecular dynamics is a popular technique to simulate the behavior of physical systems, with resolution at the atomic scale. One of its limitations is that an…”
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