Search Results - "Nordstroem, Karl"

LHAPDF6: parton density access in the LHC precision era by Buckley, Andy, Ferrando, James, Lloyd, Stephen, Nordström, Karl, Page, Ben, Rüfenacht, Martin, Schönherr, Marek, Watt, Graeme

“…The Fortran LHAPDF library has been a long-term workhorse in particle physics, providing standardised access to parton density functions for experimental and…”
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Mapping monojet constraints onto simplified dark matter models by Jacques, Thomas, Nordström, Karl

“…A bstract The move towards simplified models for Run II of the LHC will allow for stronger and more robust constraints on the dark sector. However there…”
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User guide for mapping-by-sequencing in Arabidopsis by James, Geo Velikkakam, Patel, Vipul, Nordström, Karl J V, Klasen, Jonas R, Salomé, Patrice A, Weigel, Detlef, Schneeberger, Korbinian

“…Mapping-by-sequencing combines genetic mapping with whole-genome sequencing in order to accelerate mutant identification. However, application of…”
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Giving top quark effective operators a boost by Englert, Christoph, Moore, Liam, Nordström, Karl, Russell, Michael

“…We investigate the prospects to systematically improve generic effective field theory-based searches for new physics in the top sector during LHC run 2 as well…”
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Analysis of the Arabidopsis Shoot Meristem Transcriptome during Floral Transition Identifies Distinct Regulatory Patterns and a Leucine-Rich Repeat Protein That Promotes Flowering by Torti, Stefano, Fomara, Fabio, Vincent, Coral, Andrés, Femando, Nordström, Karl, Göbel, Ulrike, Knoll, Daniela, Schoof, Heiko, Coupland, George

“…Flowering of Arabidopsis thaliana is induced by exposure to long days (LDs). During this process, the shoot apical meristem is converted to an inflorescence…”
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Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina by Bergonzi, Sara, Albani, Maria C., van Themaat, Emiel Ver Loren, Nordström, Karl J. V., Wang, Renhou, Schneeberger, Korbinian, Moerland, Perry D., Coupland, George

“…Perennial plants live for more than 1 year and flower only after an extended vegetative phase. We used Arabis alpina, a perennial relative of annual…”
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Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development by Durek, Pawel, Nordström, Karl, Gasparoni, Gilles, Salhab, Abdulrahman, Kressler, Christopher, de Almeida, Melanie, Bassler, Kevin, Ulas, Thomas, Schmidt, Florian, Xiong, Jieyi, Glažar, Petar, Klironomos, Filippos, Sinha, Anupam, Kinkley, Sarah, Yang, Xinyi, Arrigoni, Laura, Amirabad, Azim Dehghani, Ardakani, Fatemeh Behjati, Feuerbach, Lars, Gorka, Oliver, Ebert, Peter, Müller, Fabian, Li, Na, Frischbutter, Stefan, Schlickeiser, Stephan, Cendon, Carla, Fröhler, Sebastian, Felder, Bärbel, Gasparoni, Nina, Imbusch, Charles D., Hutter, Barbara, Zipprich, Gideon, Tauchmann, Yvonne, Reinke, Simon, Wassilew, Georgi, Hoffmann, Ute, Richter, Andreas S., Sieverling, Lina, Chang, Hyun-Dong, Syrbe, Uta, Kalus, Ulrich, Eils, Jürgen, Brors, Benedikt, Manke, Thomas, Ruland, Jürgen, Lengauer, Thomas, Rajewsky, Nikolaus, Chen, Wei, Dong, Jun, Sawitzki, Birgit, Chung, Ho-Ryun, Rosenstiel, Philip, Schulz, Marcel H., Schultze, Joachim L., Radbruch, Andreas, Walter, Jörn, Hamann, Alf, Polansky, Julia K.

“…The impact of epigenetics on the differentiation of memory T (Tmem) cells is poorly defined. We generated deep epigenomes comprising genome-wide profiles of…”
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Neuronal deficiency of p38α‐MAPK ameliorates symptoms and pathology of APP or Tau‐transgenic Alzheimer’s mouse models by Schnöder, Laura, Gasparoni, Gilles, Nordström, Karl, Schottek, Andrea, Tomic, Inge, Christmann, Anne, Schäfer, Karl H., Menger, Michael D., Walter, Jörn, Fassbender, Klaus, Liu, Yang

“…Alzheimer's disease (AD) is the leading cause of dementia with very limited therapeutic options. Amyloid β (Aβ) and phosphorylated Tau (p‐Tau) are key…”
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Epigenetic control of region‐specific transcriptional programs in mouse cerebellar and cortical astrocytes by Welle, Anna, Kasakow, Carmen V., Jungmann, Annemarie M., Gobbo, Davide, Stopper, Laura, Nordström, Karl, Salhab, Abdulrahman, Gasparoni, Gilles, Scheller, Anja, Kirchhoff, Frank, Walter, Jörn

“…Astrocytes from the cerebral cortex (CTX) and cerebellum (CB) share basic molecular programs, but also form distinct spatial and functional subtypes. The…”
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A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains by Salhab, Abdulrahman, Nordström, Karl, Gasparoni, Gilles, Kattler, Kathrin, Ebert, Peter, Ramirez, Fidel, Arrigoni, Laura, Müller, Fabian, Polansky, Julia K, Cadenas, Cristina, G Hengstler, Jan, Lengauer, Thomas, Manke, Thomas, Walter, Jörn

“…Partially methylated domains are extended regions in the genome exhibiting a reduced average DNA methylation level. They cover gene-poor and transcriptionally…”
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Epigenomic map of human liver reveals principles of zonated morphogenic and metabolic control by Brosch, Mario, Kattler, Kathrin, Herrmann, Alexander, von Schönfels, Witigo, Nordström, Karl, Seehofer, Daniel, Damm, Georg, Becker, Thomas, Zeissig, Sebastian, Nehring, Sophie, Reichel, Fabian, Moser, Vincent, Thangapandi, Raghavan Veera, Stickel, Felix, Baretton, Gustavo, Röcken, Christoph, Muders, Michael, Matz-Soja, Madlen, Krawczak, Michael, Gasparoni, Gilles, Hartmann, Hella, Dahl, Andreas, Schafmayer, Clemens, Walter, Jörn, Hampe, Jochen

“…A deeper epigenomic understanding of spatial organization of cells in human tissues is an important challenge. Here we report the first combined positional…”
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Differential degradation of RNA species by autophagy-related pathways in Arabidopsis by Hickl, Daniel, Drews, Franziska, Girke, Christopher, Zimmer, David, Mühlhaus, Timo, Hauth, Jan, Nordström, Karl, Trentmann, Oliver, Neuhaus, Ekkehard H, Scheuring, David, Fehlmann, Tobias, Keller, Andreas, Simon, Martin, Möhlmann, Torsten

“…Abstract The plant vacuole recycles proteins and RNA delivered to it by autophagy. In this study, by isolating intact vacuoles from Arabidopsis plants,…”
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Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers by Nordström, Karl J V, Albani, Maria C, James, Geo Velikkakam, Gutjahr, Caroline, Hartwig, Benjamin, Turck, Franziska, Paszkowski, Uta, Coupland, George, Schneeberger, Korbinian

“…Genes that cause a mutant phenotype are efficiently identified from genetic screens of model and non-model organisms from whole-genome sequencing data without…”
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Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction by Schmidt, Florian, Gasparoni, Nina, Gasparoni, Gilles, Gianmoena, Kathrin, Cadenas, Cristina, Polansky, Julia K, Ebert, Peter, Nordström, Karl, Barann, Matthias, Sinha, Anupam, Fröhler, Sebastian, Xiong, Jieyi, Dehghani Amirabad, Azim, Behjati Ardakani, Fatemeh, Hutter, Barbara, Zipprich, Gideon, Felder, Bärbel, Eils, Jürgen, Brors, Benedikt, Chen, Wei, Hengstler, Jan G, Hamann, Alf, Lengauer, Thomas, Rosenstiel, Philip, Walter, Jörn, Schulz, Marcel H

“…The binding and contribution of transcription factors (TF) to cell specific gene expression is often deduced from open-chromatin measurements to avoid costly…”
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Increased chromatin accessibility facilitates intron retention in specific cell differentiation states by Petrova, Veronika, Song, Renhua, Nordström, Karl J V, Walter, Jörn, Wong, Justin J L, Armstrong, Nicola J, Rasko, John E J, Schmitz, Ulf

“…Dynamic intron retention (IR) in vertebrate cells is of widespread biological importance. Aberrant IR is associated with numerous human diseases including…”
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Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data by Nordström, Karl J V, Schmidt, Florian, Gasparoni, Nina, Salhab, Abdulrahman, Gasparoni, Gilles, Kattler, Kathrin, Müller, Fabian, Ebert, Peter, Costa, Ivan G, Pfeifer, Nico, Lengauer, Thomas, Schulz, Marcel H, Walter, Jörn

“…Abstract Chromatin accessibility maps are important for the functional interpretation of the genome. Here, we systematically analysed assay specific…”
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Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity by Luck, Alexander, Giehr, Pascal, Nordstrom, Karl, Walter, Jorn, Wolf, Verena

“…DNA methylation is an epigenetic mark whose important role in development has been widely recognized. This epigenetic modification results in heritable…”
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Constraining new resonant physics with top spin polarisation information by Englert, Christoph, Ferrando, James, Nordström, Karl

“…We provide a comprehensive analysis of the power of including top quark-polarisation information to kinematically challenging top pair resonance searches, for…”
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Transcriptomics of a KDELR1 knockout cell line reveals modulated cell adhesion properties by Blum, Andrea, Khalifa, Saleem, Nordström, Karl, Simon, Martin, Schulz, Marcel H., Schmitt, Manfred J.

“…KDEL receptors (KDELRs) represent transmembrane proteins of the secretory pathway which regulate the retention of soluble ER-residents as well as retrograde…”
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Transgenic expression of the RNA binding protein IMP2 stabilizes miRNA targets in murine microsteatosis by Dehghani Amirabad, Azim, Ramasamy, Pathmanaban, Wierz, Marina, Nordström, Karl, Kessler, Sonja M., Schulz, Marcel H., Simon, Martin

“…Adult expression of IMP2 is often associated with several types of disease and cancer. The RNA binding protein IMP2 binds and stabilizes the IGF2 mRNA as well…”
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