Search Results - "Nordahl, Thomas"

SignalP 4.0: discriminating signal peptides from transmembrane regions by Petersen, Thomas Nordahl, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik

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Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data by Al-Nakeeb, Kosai, Petersen, Thomas Nordahl, Sicheritz-Pontén, Thomas

“…Whole-genome sequencing (WGS) projects provide short read nucleotide sequences from nuclear and possibly organelle DNA depending on the source of origin…”
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A generic method for assignment of reliability scores applied to solvent accessibility predictions by Petersen, Bent, Petersen, Thomas Nordahl, Andersen, Pernille, Nielsen, Morten, Lundegaard, Claus

“…Estimation of the reliability of specific real value predictions is nontrivial and the efficacy of this is often questionable. It is important to know if you…”
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Information Technologies: An Augmentation to Post-Traumatic Stress Disorder Treatment Among Trauma Survivors by Azarang, Atoosa, Pakyurek, Murat, Giroux, Caroline, Nordahl, Thomas E, Yellowlees, Peter

“…This review article presents existing research describing how information technologies can be used to improve mental health services for trauma survivors,…”
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NetTurnP--neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features by Petersen, Bent, Lundegaard, Claus, Petersen, Thomas Nordahl

“…β-turns are the most common type of non-repetitive structures, and constitute on average 25% of the amino acids in proteins. The formation of β-turns plays an…”
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SignalP 5.0 improves signal peptide predictions using deep neural networks by Almagro Armenteros, José Juan, Tsirigos, Konstantinos D., Sønderby, Casper Kaae, Petersen, Thomas Nordahl, Winther, Ole, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik

“…Signal peptides (SPs) are short amino acid sequences in the amino terminus of many newly synthesized proteins that target proteins into, or across, membranes…”
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Cost-utility and cost-effectiveness of individual placement support and cognitive remediation in people with severe mental illness: Results from a randomized clinical trial by Christensen, Thomas Nordahl, Kruse, Marie, Hellström, Lone, Eplov, Lene Falgaard

“…Administrators and policymakers are increasingly interested in individual placement and support (IPS) as a way of helping people with severe mental illness…”
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Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance by Nordahl Petersen, Thomas, Rasmussen, Simon, Hasman, Henrik, Carøe, Christian, Bælum, Jacob, Charlotte Schultz, Anna, Bergmark, Lasse, Svendsen, Christina A., Lund, Ole, Sicheritz-Pontén, Thomas, Aarestrup, Frank M.

“…Human populations worldwide are increasingly confronted with infectious diseases and antimicrobial resistance spreading faster and appearing more frequently…”
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MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads by Petersen, Thomas Nordahl, Lukjancenko, Oksana, Thomsen, Martin Christen Frølund, Maddalena Sperotto, Maria, Lund, Ole, Møller Aarestrup, Frank, Sicheritz-Pontén, Thomas

“…An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics…”
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Neuropsychological Effects of Chronic Methamphetamine Use on Neurotransmitters and Cognition: A Review by Nordahl, Thomas E, Salo, Ruth, Leamon, Martin

“…Methamphetamine use is on the rise, with an imminent upsurge of abuse and dependence reported across the United States. Currently, preliminary evidence…”
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Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants - Identification of Reservoir Resistome Signatures by Duarte, Ana Sofia Ribeiro, Röder, Timo, Van Gompel, Liese, Petersen, Thomas Nordahl, Hansen, Rasmus Borup, Hansen, Inge Marianne, Bossers, Alex, Aarestrup, Frank M, Wagenaar, Jaap A, Hald, Tine

“…Metagenomics can unveil the genetic content of the total microbiota in different environments, such as food products and the guts of humans and livestock. It…”
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Psychiatric comorbidity in methamphetamine dependence by Salo, Ruth, Flower, Keith, Kielstein, Anousheh, Leamon, Martin H, Nordahl, Thomas E, Galloway, Gantt P

“…Abstract The primary aim of the present study was to assess the prevalence of psychiatric comorbidity in a large sample of methamphetamine (MA)-dependent…”
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Integrated mental health care and vocational rehabilitation intervention to improve return to work rates for people on sick leave due to common mental and functional disorders (IBBIS-II)—a study protocol for a randomized clinical trial by Christensen, Thomas Nordahl, Poulsen, Chalotte Heinsvig, Ebersbach, Bea Kolbe, Eplov, Lene Falgaard

“…Background Mental illness has an estimated financial burden on the Danish economy of 3.4% of the gross national product every year due to lost productivity,…”
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Brain serotonin synthesis capacity in obsessive-compulsive disorder: effects of cognitive behavioral therapy and sertraline by Lissemore, Jennifer I., Sookman, Debbie, Gravel, Paul, Berney, Alexandre, Barsoum, Amir, Diksic, Mirko, Nordahl, Thomas E., Pinard, Gilbert, Sibon, Igor, Cottraux, Jean, Leyton, Marco, Benkelfat, Chawki

“…Cognitive behavioral therapy (CBT) and selective serotonin reuptake inhibitors (SSRIs) are both effective treatments for some patients with…”
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Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds by Geertz-Hansen, Henrik Marcus, Blom, Nikolaj, Feist, Adam M., Brunak, Søren, Petersen, Thomas Nordahl

“…ABSTRACT Obtaining optimal cofactor balance to drive production is a challenge in metabolically engineered microbial production strains. To facilitate…”
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Global Distribution of mcr Gene Variants in 214K Metagenomic Samples by Martiny, Hannah-Marie, Munk, Patrick, Brinch, Christian, Szarvas, Judit, Aarestrup, Frank M, Petersen, Thomas Nordahl

“…Since the initial discovery of a mobilized colistin resistance gene ( ), several other variants have been reported, some of which might have circulated a while…”
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Cognitive Control and White Matter Callosal Microstructure in Methamphetamine-Dependent Subjects: A Diffusion Tensor Imaging Study by Salo, Ruth, Nordahl, Thomas E, Buonocore, Michael H, Natsuaki, Yutaka, Waters, Christy, Moore, Charles D, Galloway, Gantt P, Leamon, Martin H

“…Background Methamphetamine (MA) abuse causes damage to structures within the human cerebrum, with particular susceptibility to white matter (WM). Abnormalities…”
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A Systematic Study of Site-specific GalNAc-type O-Glycosylation Modulating Proprotein Convertase Processing by Gram Schjoldager, Katrine Ter-Borch, Vester-Christensen, Malene B., Goth, Christoffer K., Petersen, Thomas Nordahl, Brunak, Søren, Bennett, Eric P., Levery, Steven B., Clausen, Henrik

“…Site-specific GalNAc-type O-glycosylation is emerging as an important co-regulator of proprotein convertase (PC) processing of proteins. PC processing is…”
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Semigroup theory of symmetry by Rosenfeld, Vladimir R., Nordahl, Thomas E.

“…Symmetry is one of the most fundamental concepts of all nature. We discuss the general theory of symmetry based on theory of semigroups. This includes and…”
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Attentional Control and Brain Metabolite Levels in Methamphetamine Abusers by Salo, Ruth, Nordahl, Thomas E, Natsuaki, Yutaka, Leamon, Martin H, Galloway, Gantt P, Waters, Christy, Moore, Charles D, Buonocore, Michael H

“…Background Methamphetamine abuse is associated with neurotoxicity to frontostriatal brain regions with concomitant deleterious effects on cognitive processes…”
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