Search Results - "Nomidis, Stefanos K"

Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA by Nomidis, Stefanos K, Kriegel, Franziska, Vanderlinden, Willem, Lipfert, Jan, Carlon, Enrico

“…Recent magnetic tweezers experiments have reported systematic deviations of the twist response of double-stranded DNA from the predictions of the twistable…”
Get full text

DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations by Nomidis, Stefanos K, Carlon, Enrico, Gruber, Stephan, Marko, John F

“…Structural Maintenance of Chromosomes (SMC) complexes play essential roles in genome organization across all domains of life. To determine how the activities…”
Get full text

Bend-Induced Twist Waves and the Structure of Nucleosomal DNA by Skoruppa, Enrico, Nomidis, Stefanos K, Marko, John F, Carlon, Enrico

“…Recent work indicates that twist-bend coupling plays an important role in DNA micromechanics. Here we investigate its effect on bent DNA. We provide an…”
Get full text

DNA elasticity from coarse-grained simulations: The effect of groove asymmetry by Skoruppa, Enrico, Laleman, Michiel, Nomidis, Stefanos K, Carlon, Enrico

“…It is well established that many physical properties of DNA at sufficiently long length scales can be understood by means of simple polymer models. One of the…”
Get more information

Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond by Nomidis, Stefanos K, Skoruppa, Enrico, Carlon, Enrico, Marko, John F

“…The simplest model of DNA mechanics describes the double helix as a continuous rod with twist and bend elasticity. Recent work has discussed the relevance of a…”
Get more information

Autonomous and Active Transport Operated by an Entropic DNA Piston by Bayoumi, Mariam, Nomidis, Stefanos K, Willems, Kherim, Carlon, Enrico, Maglia, Giovanni

“…We present a synthetic nanoscale piston that uses chemical energy to perform molecular transport against an applied bias. Such a device comprises a 13 by 5 nm…”
Get full text

Enhancing the Performance of DNA Surface-Hybridization Biosensors through Target Depletion by Nomidis, Stefanos K, Szymonik, Michal, Venken, Tom, Carlon, Enrico, Hooyberghs, Jef

“…DNA surface-hybridization biosensors utilize the selective hybridization of target sequences in solution to surface-immobilized probes. In this process, the…”
Get full text

Depletion of wild-type target enhances the hybridization-based sensitivity of low-abundant mutation detection by reference capture probes by Van Hoof, Rebekka, Szymonik, Michal, Nomidis, Stefanos K., Hollanders, Karen, Jacobs, An, Nelissen, Inge, Wagner, Patrick, Hooyberghs, Jef

“…Nucleic acids duplex formation via hybridization is a crucial reaction in many processes and application across different disciplines. In life sciences the…”
Get full text

Twist-bend coupling and the statistical mechanics of the twistable worm-like chain model of DNA: perturbation theory and beyond by Nomidis, Stefanos K, Skoruppa, Enrico, Carlon, Enrico, Marko, John F

“…Phys. Rev. E 99, 032414 (2019) The simplest model of DNA mechanics describes the double helix as a continuous rod with twist and bend elasticity. Recent work…”
Get full text

Bend-Induced Twist Waves and the Structure of Nucleosomal DNA by Skoruppa, Enrico, Nomidis, Stefanos K, Marko, John F, Carlon, Enrico

“…Phys. Rev. Lett. 121, 088101 (2018) Recent work indicates that twist-bend coupling plays an important role in DNA micromechanics. Here we investigate its…”
Get full text

DNA capture into the ClyA nanopore: diffusion-limited versus reaction-limited processes by Nomidis, Stefanos K, Hooyberghs, Jef, Maglia, Giovanni, Carlon, Enrico

“…J. Phys.: Condens. Matter 30, 304001 (2018) The capture and translocation of biomolecules through nanometer-scale pores are processes with a potential large…”
Get full text

Enhancing the performance of DNA surface-hybridization biosensors through target depletion by Nomidis, Stefanos K, Szymonik, Michal, Venken, Tom, Carlon, Enrico, Hooyberghs, Jef

“…Langmuir 35, 12276 (2019) DNA surface-hybridization biosensors utilize the selective hybridization of target sequences in solution to surface-immobilized…”
Get full text