Search Results - "Nitzan, Mor"

Model-free inference of direct network interactions from nonlinear collective dynamics by Casadiego, Jose, Nitzan, Mor, Hallerberg, Sarah, Timme, Marc

“…The topology of interactions in network dynamical systems fundamentally underlies their function. Accelerating technological progress creates massively…”
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Optimal sequencing budget allocation for trajectory reconstruction of single cells by Moriel, Noa, Memet, Edvin, Nitzan, Mor

“…Abstract Background Charting cellular trajectories over gene expression is key to understanding dynamic cellular processes and their underlying mechanisms…”
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Integration of Bacterial Small RNAs in Regulatory Networks by Nitzan, Mor, Rehani, Rotem, Margalit, Hanah

“…Small RNAs (sRNAs) are central regulators of gene expression in bacteria, controlling target genes posttranscriptionally by base pairing with their mRNAs…”
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SiFT: uncovering hidden biological processes by probabilistic filtering of single-cell data by Piran, Zoe, Nitzan, Mor

“…Cellular populations simultaneously encode multiple biological attributes, including spatial configuration, temporal trajectories, and cell-cell interactions…”
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Evidence for Functional Networks within the Human Brain's White Matter by Peer, Michael, Nitzan, Mor, Bick, Atira S, Levin, Netta, Arzy, Shahar

“…Investigation of the functional macro-scale organization of the human cortex is fundamental in modern neuroscience. Although numerous studies have identified…”
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NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport by Moriel, Noa, Senel, Enes, Friedman, Nir, Rajewsky, Nikolaus, Karaiskos, Nikos, Nitzan, Mor

“…Single-cell RNA-sequencing (scRNA-seq) technologies have revolutionized modern biomedical sciences. A fundamental challenge is to incorporate spatial…”
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Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram by Biancalani, Tommaso, Scalia, Gabriele, Buffoni, Lorenzo, Avasthi, Raghav, Lu, Ziqing, Sanger, Aman, Tokcan, Neriman, Vanderburg, Charles R., Segerstolpe, Åsa, Zhang, Meng, Avraham-Davidi, Inbal, Vickovic, Sanja, Nitzan, Mor, Ma, Sai, Subramanian, Ayshwarya, Lipinski, Michal, Buenrostro, Jason, Brown, Nik Bear, Fanelli, Duccio, Zhuang, Xiaowei, Macosko, Evan Z., Regev, Aviv

“…Charting an organs’ biological atlas requires us to spatially resolve the entire single-cell transcriptome, and to relate such cellular features to the…”
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Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome by Holmes, Antony B, Corinaldesi, Clarissa, Shen, Qiong, Kumar, Rahul, Compagno, Nicolo, Wang, Zhong, Nitzan, Mor, Grunstein, Eli, Pasqualucci, Laura, Dalla-Favera, Riccardo, Basso, Katia

“…In response to T cell-dependent antigens, mature B cells are stimulated to form germinal centers (GCs), the sites of B cell affinity maturation and the cell of…”
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ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin by Sadeh, Ronen, Sharkia, Israa, Fialkoff, Gavriel, Rahat, Ayelet, Gutin, Jenia, Chappleboim, Alon, Nitzan, Mor, Fox-Fisher, Ilana, Neiman, Daniel, Meler, Guy, Kamari, Zahala, Yaish, Dayana, Peretz, Tamar, Hubert, Ayala, Cohen, Jonathan E., Salah, Azzam, Temper, Mark, Grinshpun, Albert, Maoz, Myriam, Abu-Gazala, Samir, Ben Ya’acov, Ami, Shteyer, Eyal, Safadi, Rifaat, Kaplan, Tommy, Shemer, Ruth, Planer, David, Galun, Eithan, Glaser, Benjamin, Zick, Aviad, Dor, Yuval, Friedman, Nir

“…Cell-free DNA (cfDNA) in human plasma provides access to molecular information about the pathological processes in the organs or tumors from which it…”
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Selective flexible packaging pathways of the segmented genome of influenza A virus by Haralampiev, Ivan, Prisner, Simon, Nitzan, Mor, Schade, Matthias, Jolmes, Fabian, Schreiber, Max, Loidolt-Krüger, Maria, Jongen, Kalle, Chamiolo, Jasmine, Nilson, Niklaas, Winter, Franziska, Friedman, Nir, Seitz, Oliver, Wolff, Thorsten, Herrmann, Andreas

“…The genome of influenza A viruses (IAV) is encoded in eight distinct viral ribonucleoproteins (vRNPs) that consist of negative sense viral RNA (vRNA) covered…”
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Mapping lineage-traced cells across time points with moslin by Lange, Marius, Piran, Zoe, Klein, Michal, Spanjaard, Bastiaan, Klein, Dominik, Junker, Jan Philipp, Theis, Fabian J, Nitzan, Mor

“…Simultaneous profiling of single-cell gene expression and lineage history holds enormous potential for studying cellular decision-making. Recent computational…”
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Revealing physical interaction networks from statistics of collective dynamics by Nitzan, Mor, Casadiego, Jose, Timme, Marc

“…Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current…”
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Analytical results for the distribution of shortest path lengths in random networks by Katzav, Eytan, Nitzan, Mor, ben-Avraham, Daniel, Krapivsky, P. L., Kühn, Reimer, Ross, Nathan, Biham, Ofer

“…We present two complementary analytical approaches for calculating the distribution of shortest path lengths in Erd s-Rényi networks, based on recursion…”
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Programming cell growth into different cluster shapes using diffusible signals by Guo, Yipei, Nitzan, Mor, Brenner, Michael P

“…Advances in genetic engineering technologies have allowed the construction of artificial genetic circuits, which have been used to generate spatial patterns of…”
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Emergence of division of labor in tissues through cell interactions and spatial cues by Adler, Miri, Moriel, Noa, Goeva, Aleksandrina, Avraham-Davidi, Inbal, Mages, Simon, Adams, Taylor S., Kaminski, Naftali, Macosko, Evan Z., Regev, Aviv, Medzhitov, Ruslan, Nitzan, Mor

“…Most cell types in multicellular organisms can perform multiple functions. However, not all functions can be optimally performed simultaneously by the same…”
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Reversible functional connectivity disturbances during transient global amnesia by Peer, Michael, Nitzan, Mor, Goldberg, Ilan, Katz, Judith, Gomori, J. Moshe, Ben-Hur, Tamir, Arzy, Shahar

“…Objective Transient global amnesia (TGA), an abrupt occurrence of severe anterograde episodic amnesia accompanied by repetitive questioning, has been known for…”
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Flexible level-1 consensus ensuring stable social choice: analysis and algorithms by Nitzan, Mor, Nitzan, Shmuel, Segal-Halevi, Erel

“…Level-1 consensus is a recently-introduced property of a preference-profile. Intuitively, it means that there exists a preference relation which induces an…”
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Dynamics of the type III secretion system activity of enteropathogenic Escherichia coli by Mills, Erez, Baruch, Kobi, Aviv, Gili, Nitzan, Mor, Rosenshine, Ilan

“…Type III secretion systems (TTSSs) are employed by pathogens to translocate host cells with effector proteins, which are crucial for virulence. The dynamics of…”
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Predicting IVF outcome in poor ovarian responders by Lebovitz, Oshrit, Haas, Jigal, Mor, Nitzan, Zilberberg, Eran, Aizer, Adva, Kirshenbaum, Michal, Orvieto, Raoul, Nahum, Ravit

“…Abstract Background Poor responders to ovarian stimulation are one of the most challenging populations to treat. As a failed cycle can cause a considerable…”
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Author Correction: ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin by Sadeh, Ronen, Sharkia, Israa, Fialkoff, Gavriel, Rahat, Ayelet, Gutin, Jenia, Chappleboim, Alon, Nitzan, Mor, Fox-Fisher, Ilana, Neiman, Daniel, Meler, Guy, Kamari, Zahala, Yaish, Dayana, Peretz, Tamar, Hubert, Ayala, Cohen, Jonathan E., Salah, Azzam, Temper, Mark, Grinshpun, Albert, Maoz, Myriam, Abu-Gazala, Samir, Ben Ya’acov, Ami, Shteyer, Eyal, Safadi, Rifaat, Kaplan, Tommy, Shemer, Ruth, Planer, David, Galun, Eithan, Glaser, Benjamin, Zick, Aviad, Dor, Yuval, Friedman, Nir

“…A Correction to this paper has been published: https://doi.org/10.1038/s41587-021-00831-9…”
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