Search Results - "Nishihara, Yasutaka"

Gate-controlled proton diffusion and protonation-induced ratchet motion in the stator of the bacterial flagellar motor by Nishihara, Yasutaka, Akio Kitao

“…The proton permeation process of the stator complex MotA/B in the flagellar motor of Escherichia coli was investigated. The atomic model structure of the…”
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High pressure inhibits signaling protein binding to the flagellar motor and bacterial chemotaxis through enhanced hydration by Hata, Hiroaki, Nishihara, Yasutaka, Nishiyama, Masayoshi, Sowa, Yoshiyuki, Kawagishi, Ikuro, Kitao, Akio

“…High pressure below 100 MPa interferes inter-molecular interactions without causing pressure denaturation of proteins. In Escherichia coli , the binding of the…”
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Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor by Onoue, Yasuhiro, Iwaki, Masayo, Shinobu, Ai, Nishihara, Yasutaka, Iwatsuki, Hiroto, Terashima, Hiroyuki, Kitao, Akio, Kandori, Hideki, Homma, Michio

“…The bacterial flagellar motor is a unique supramolecular complex which converts ion flow into rotational force. Many biological devices mainly use two types of…”
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A search for ligand diffusion pathway in myoglobin using a metadynamics simulation by Nishihara, Yasutaka, Hayashi, Shigehiko, Kato, Shigeki

“…Three-dimensional free energy map of the CO escaping pathway. The carbon monoxide (CO) migration pathways inside myoglobin are investigated by molecular…”
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Protein Collective Motions Coupled to Ligand Migration in Myoglobin by Nishihara, Yasutaka, Kato, Shigeki, Hayashi, Shigehiko

“…Ligand migration processes inside myoglobin and protein dynamics coupled to the migration were theoretically investigated with molecular dynamics simulations…”
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The Escape Process of Carbon Monoxide from Myoglobin to Solution at Physiological Temperature by Nishihara, Yasutaka, Sakakura, Masaaki, Kimura, Yoshifumi, Terazima, Masahide

“…The carbon monoxide (CO) docking sites involved in the ligand escape process from the iron atom in hem of myoglobin (Mb) to solution at physiological…”
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Pressure Effects on Dissociation of CheY-FliM Complex Studied by Molecular Dynamics Simulations by Hata, Hiroaki, Nishihara, Yasutaka, Nishiyama, Masayoshi, Kawagishi, Ikuro, Kitao, Akio

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Structure of the MotA/B Proton Channel by Kitao, Akio, Nishihara, Yasutaka

“…Flagellar motors utilize the motive force of protons and other ions as an energy source. To elucidate the mechanisms of ion permeation and torque generation,…”
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Free Energy Calculation of Protein Conformational Changes using Parallel Cascade Selection Molecular Dynamics Simulation and Markov State Model by Nishihara, Yasutaka, Harada, Ryuhei, Kitao, Akio

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A Molecular Simulation Study to Investigate Actin Filament Elongation Mechanism by Wakai, Nobuhiko, Nishihara, Yasutaka, Takemura, Kazuhiro, Fujii, Takashi, Namba, Keiichi, Kitao, Akio

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