Search Results - "Nikolova, Valya"
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Water inside β-cyclodextrin cavity: amount, stability and mechanism of binding
Published in Beilstein journal of organic chemistry (17-07-2019)“…Cyclodextrins (CDs) are native host systems with inherent ability to form inclusion complexes with various molecular entities, mostly hydrophobic substances…”
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2
Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca2+/Ln3+ Competition
Published in International journal of molecular sciences (27-03-2023)“…Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The…”
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3
Metal-Assisted Complexation of Fluorogenic Dyes by Cucurbit[7]uril and Cucurbit[8]uril: A DFT Evaluation of the Key Factors Governing the Host-Guest Recognition
Published in Molecules (Basel, Switzerland) (05-02-2023)“…With the emergence of host-guest systems, a novel branch of complexation chemistry has found wide application in industries such as food, pharmacy, medicine,…”
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4
N -Methyl- and N -Phenylpiperazine Functionalized Styryl Dyes Inside Cucurbiturils: Theoretical Assessment of the Factors Governing the Host-Guest Recognition
Published in Molecules (Basel, Switzerland) (16-12-2023)“…The family of cucurbiturils (CBs), the unique pumpkin-shaped macrocycles, has received great attention over the past four decades owing to their remarkable…”
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5
Density Functional Theory Prediction of Laser Dyes-Cucurbit[7]uril Binding Affinities
Published in Molecules (Basel, Switzerland) (01-09-2024)“…Among a variety of diverse host molecules distinguished by specific characteristics, the cucurbit[n]uril (CB) family stands out, being widely known for the…”
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6
Deciphering the mechanism of γ-cyclodextrin's hydrophobic cavity hydration: an integrated experimental and theoretical study
Published in Beilstein journal of organic chemistry (17-10-2024)“…Cyclodextrins (CDs) are host systems with inherent capability for inclusion complex formation with various molecular entities, mostly hydrophobic substances…”
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7
Complexation of trivalent metal cations (Al 3+ , Ga 3+ , In 3+ , La 3+ , Lu 3+ ) to cucurbiturils: a DFT/SMD evaluation of the key factors governing the host-guest recognition
Published in Physical chemistry chemical physics : PCCP (09-03-2022)“…Cucurbiturils (CBs), the pumpkin-shaped macrocycles, are suitable hosts for an array of neutral and cationic species. A plethora of host-guest complexes…”
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8
Naphthalimide-Based Amphiphiles: Synthesis and DFT Studies of the Aggregation and Interaction of a Simplified Model System with Water Molecules
Published in Molecules (Basel, Switzerland) (04-09-2024)“…Systems containing amphiphilic/pathic molecules have the tremendous capacity to self-assemble under appropriate conditions to form morphologies with…”
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9
Cu + /Ag + Competition in Type I Copper Proteins (T1Cu)
Published in Biomolecules (Basel, Switzerland) (01-04-2023)“…Due to the similarity in the basic coordination behavior of their mono-charged cations, silver biochemistry is known to be linked to that of copper in…”
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10
Host-guest interactions between p -sulfonatocalix[4]arene and p -sulfonatothiacalix[4]arene and group IA, IIA and f-block metal cations: a DFT/SMD study
Published in Beilstein journal of organic chemistry (2019)“…The molecular recognition in aqueous solution is extremely important because most biological processes occur in aqueous solution. Water-soluble members of the…”
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11
Strontium Binding to α-Parvalbumin, a Canonical Calcium-Binding Protein of the “EF-Hand” Family
Published in Biomolecules (Basel, Switzerland) (05-08-2021)“…Strontium salts are used for treatment of osteoporosis and bone cancer, but their impact on calcium-mediated physiological processes remains obscure. To…”
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12
Mini-Review on Structure–Reactivity Relationship for Aromatic Molecules: Recent Advances
Published in ACS omega (15-03-2022)“…Recent advances in quantifying nucleophilic reactivities in chemical reactions and intermolecular interactions of aromatic molecules are reviewed. This survey…”
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13
Effects of structural variations on the hydrogen bond pairing between adenine derivatives and thymine
Published in Macedonian Journal of Chemistry and Chemical Engineering (01-01-2015)“…The hydrogen bonding between substituted adenines and thymine was investigated by density functional theory computations at the B3LYP/6-311+G(2d,2p) level. The…”
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14
Theoretical Insight into the Phosphate-Targeted Silver’s Antibacterial Action: Differentiation between Gram (+) and Gram (−) Bacteria
Published in Inorganic chemistry (04-07-2022)“…Although silver is one of the first metals finding broad applications in everyday life, specific key points of the intimate mechanism of its…”
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15
Zinc and Its Critical Role in Retinitis pigmentosa: Insights from DFT/SMD Calculations
Published in Inorganic chemistry (07-12-2020)“…Metal cations are required for the proper function of a great amount of biological processes, as they are indispensable cofactors participating in up to 40% of…”
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16
α‑Cyclodextrin: How Effectively Can Its Hydrophobic Cavity Be Hydrated?
Published in The journal of physical chemistry. B (05-10-2017)“…Cyclodextrins (CDs) are among the most widely used native host systems with ability to form inclusion complexes with various molecular objects. This ability is…”
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17
Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca[sup.2+]/Ln[sup.3+] Competition
Published in International journal of molecular sciences (01-04-2023)“…Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The…”
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Journal Article -
18
Implementation of Three Gallium-Based Complexes in the “Trojan Horse” Antibacterial Strategy against A. baumannii: A DFT Approach
Published in Inorganic chemistry (19-08-2024)“…Microorganisms of the ESKAPE group pose an enormous threat to human well-being, thus requiring a multidisciplinary approach for discovering novel drugs that…”
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19
Density Functional Theory Prediction of Laser Dyes-Cucurbit7uril Binding Affinities
Published in Molecules (Basel, Switzerland) (16-09-2024)“…Among a variety of diverse host molecules distinguished by specific characteristics, the cucurbit[n]uril (CB) family stands out, being widely known for the…”
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Journal Article -
20
IN/I-Methyl- and IN/I-Phenylpiperazine Functionalized Styryl Dyes Inside Cucurbiturils: Theoretical Assessment of the Factors Governing the Host–Guest Recognition
Published in Molecules (Basel, Switzerland) (01-12-2023)“…The family of cucurbiturils (CBs), the unique pumpkin-shaped macrocycles, has received great attention over the past four decades owing to their remarkable…”
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