Search Results - "Nielsen, Alex T"

Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution by Mundhada, Hemanshu, Seoane, Jose M., Schneider, Konstantin, Koza, Anna, Christensen, Hanne B., Klein, Tobias, Phaneuf, Patrick V., Herrgard, Markus, Feist, Adam M., Nielsen, Alex T.

“…L-serine is a promising building block biochemical with a high theoretical production yield from glucose. Toxicity of L-serine is however prohibitive for…”
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Predictable tuning of protein expression in bacteria by Bonde, Mads T, Pedersen, Margit, Klausen, Michael S, Jensen, Sheila I, Wulff, Tune, Harrison, Scott, Nielsen, Alex T, Herrgård, Markus J, Sommer, Morten O A

“…The free EMOPEC web tool enables precise tuning of bacterial protein expression on the basis of small changes to the Shine-Dalgarno sequence; oligos can be…”
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Broad-Host-Range ProUSER Vectors Enable Fast Characterization of Inducible Promoters and Optimization of p‑Coumaric Acid Production in Pseudomonas putida KT2440 by Calero, Patricia, Jensen, Sheila I, Nielsen, Alex T

“…Pseudomonas putida KT2440 has gained increasing interest as a host for the production of biochemicals. Because of the lack of a systematic characterization of…”
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A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory by Kristjansdottir, Thordis, Bosma, Elleke F, Branco Dos Santos, Filipe, Özdemir, Emre, Herrgård, Markus J, França, Lucas, Ferreira, Bruno, Nielsen, Alex T, Gudmundsson, Steinn

“…Lactobacillus reuteri is a heterofermentative Lactic Acid Bacterium (LAB) that is commonly used for food fermentations and probiotic purposes. Due to its…”
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CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae by Jakočiu̅nas, Tadas, Rajkumar, Arun S, Zhang, Jie, Arsovska, Dushica, Rodriguez, Angelica, Jendresen, Christian Bille, Skjødt, Mette L, Nielsen, Alex T, Borodina, Irina, Jensen, Michael K, Keasling, Jay D

“…Homologous recombination (HR) in Saccharomyces cerevisiae has been harnessed for both plasmid construction and chromosomal integration of foreign DNA. Still,…”
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Genome-Based Comparison of All Species of the Genus Moorella , and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica by Redl, Stephanie, Poehlein, Anja, Esser, Carola, Bengelsdorf, Frank R, Jensen, Torbjørn Ø, Jendresen, Christian B, Tindall, Brian J, Daniel, Rolf, Dürre, Peter, Nielsen, Alex T

“…Fermentation of gases provides a promising opportunity for the production of biochemicals from renewable resources, which has resulted in a growing interest in…”
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The Vibrio cholerae Chitin Utilization Program by Meibom, Karin L., Li, Xibing B., Nielsen, Alex T., Wu, Cheng-Yen, Roseman, Saul, Schoolnik, Gary K.

“…Chitin, an insoluble polymer of GlcNAc, is an abundant source of carbon, nitrogen, and energy for marine microorganisms. Microarray expression profiling and…”
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A bistable switch and anatomical site control Vibrio cholerae virulence gene expression in the intestine by Nielsen, Alex T, Dolganov, Nadia A, Rasmussen, Thomas, Otto, Glen, Miller, Michael C, Felt, Stephen A, Torreilles, Stéphanie, Schoolnik, Gary K

“…A fundamental, but unanswered question in host-pathogen interactions is the timing, localization and population distribution of virulence gene expression…”
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Characterization of a Feedback-Resistant Mevalonate Kinase from the Archaeon Methanosarcina mazei by PRIMAK, Yuliya A, MAI DU, MILLER, Michael C, WELLS, Derek H, NIELSEN, Alex T, WEYLER, Walter, BECK, Zachary Q

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Adaptive laboratory evolution of Bacillus subtilis to overcome toxicity of lignocellulosic hydrolysate derived from Distiller's dried grains with solubles (DDGS) by Driessen, Jasper L.S.P., Johnsen, Josefin, Pogrebnyakov, Ivan, Mohamed, Elsayed T.T., Mussatto, Solange I., Feist, Adam M., Jensen, Sheila I., Nielsen, Alex T.

“…Microbial tolerance to toxic compounds formed during biomass pretreatment is a significant challenge to produce bio-based products from lignocellulose cost…”
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Trash to treasure: production of biofuels and commodity chemicals via syngas fermenting microorganisms by Latif, Haythem, Zeidan, Ahmad A, Nielsen, Alex T, Zengler, Karsten

“…Graphical abstract…”
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Combining genetic engineering and bioprocess concepts for improved phenylpropanoid production by Virklund, Alexander, Jensen, Sheila I., Nielsen, Alex T., Woodley, John M.

“…The group of natural aromatic compounds known as phenylpropanoids has diverse applications, but current methods of production which are largely based on…”
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Genome‐wide identification of tolerance mechanisms toward p‐coumaric acid in Pseudomonas putida by Calero, Patricia, Jensen, Sheila I., Bojanovič, Klara, Lennen, Rebecca M., Koza, Anna, Nielsen, Alex T.

“…The soil bacterium Pseudomonas putida KT2440 has gained increasing biotechnological interest due to its ability to tolerate different types of stress. Here,…”
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Genome editing of lactic acid bacteria: opportunities for food, feed, pharma and biotech by Börner, Rosa A, Kandasamy, Vijayalakshmi, Axelsen, Amalie M, Nielsen, Alex T, Bosma, Elleke F

“…Abstract This mini-review provides a perspective of traditional, emerging and future applications of lactic acid bacteria (LAB) and how genome editing tools…”
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Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress by Jensen, Sheila I., Lennen, Rebecca M., Herrgård, Markus J., Nielsen, Alex T.

“…Generation of multiple genomic alterations is currently a time consuming process. Here, a method was established that enables highly efficient and simultaneous…”
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Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor by NIELSEN, A. T, LIU, W.-T, FILIPE, C, GRADY, L. JR, MOLIN, S, STAHL, D. A

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules by Lauridsen, Lasse H, Doessing, Holger B, Long, Katherine S, Nielsen, Alex T

“…In vitro selection of aptamers that recognize small organic molecules has proven difficult, in part due to the challenge of immobilizing small molecules on…”
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A clean in-frame knockout system for gene deletion in Acetobacterium woodii by Baker, Jonathan P., Sáez-Sáez, Javier, Jensen, Sheila I., Nielsen, Alex T., Minton, Nigel P.

“…Acetogenic bacteria produce acetate following the fixation of CO2 via the Wood-Ljungdahl pathway. As such, they represent excellent process organisms for the…”
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The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42 by Aparicio, Tomás, Jensen, Sheila I., Nielsen, Alex T., de Lorenzo, Victor, Martínez-García, Esteban

“…Some strains of the soil bacterium Pseudomonas putida have become in recent years platforms of choice for hosting biotransformations of industrial interest…”
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Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals by Lennen, Rebecca M., Lim, Hyun Gyu, Jensen, Kristian, Mohammed, Elsayed T., Phaneuf, Patrick V., Noh, Myung Hyun, Malla, Sailesh, Börner, Rosa A., Chekina, Ksenia, Özdemir, Emre, Bonde, Ida, Koza, Anna, Maury, Jérôme, Pedersen, Lasse E., Schöning, Lars Y., Sonnenschein, Nikolaus, Palsson, Bernhard O., Nielsen, Alex T., Sommer, Morten O.A., Herrgård, Markus J., Feist, Adam M.

“…Although strain tolerance to high product concentrations is a barrier to the economically viable biomanufacturing of industrial chemicals, chemical tolerance…”
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