Search Results - "Nguyen, Phuong H."

Scalable training of artificial neural networks with adaptive sparse connectivity inspired by network science by Mocanu, Decebal Constantin, Mocanu, Elena, Stone, Peter, Nguyen, Phuong H., Gibescu, Madeleine, Liotta, Antonio

“…Through the success of deep learning in various domains, artificial neural networks are currently among the most used artificial intelligence methods. Taking…”
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On-Line Building Energy Optimization Using Deep Reinforcement Learning by Mocanu, Elena, Mocanu, Decebal Constantin, Nguyen, Phuong H., Liotta, Antonio, Webber, Michael E., Gibescu, Madeleine, Slootweg, J. G.

“…Unprecedented high volumes of data are becoming available with the growth of the advanced metering infrastructure. These are expected to benefit planning and…”
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Self-Assembly of Amyloid-Beta (Aβ) Peptides from Solution to Near In Vivo Conditions by Nguyen, Phuong. H., Sterpone, Fabio, Derreumaux, Philippe

“…Understanding the atomistic resolution changes during the self-assembly of amyloid peptides or proteins is important to develop compounds or conditions to…”
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Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer’s Disease, Parkinson’s Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis by Nguyen, Phuong H, Ramamoorthy, Ayyalusamy, Sahoo, Bikash R, Zheng, Jie, Faller, Peter, Straub, John E, Dominguez, Laura, Shea, Joan-Emma, Dokholyan, Nikolay V, De Simone, Alfonso, Ma, Buyong, Nussinov, Ruth, Najafi, Saeed, Ngo, Son Tung, Loquet, Antoine, Chiricotto, Mara, Ganguly, Pritam, McCarty, James, Li, Mai Suan, Hall, Carol, Wang, Yiming, Miller, Yifat, Melchionna, Simone, Habenstein, Birgit, Timr, Stepan, Chen, Jiaxing, Hnath, Brianna, Strodel, Birgit, Kayed, Rakez, Lesné, Sylvain, Wei, Guanghong, Sterpone, Fabio, Doig, Andrew J, Derreumaux, Philippe

“…Protein misfolding and aggregation is observed in many amyloidogenic diseases affecting either the central nervous system or a variety of peripheral tissues…”
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Tau R3–R4 Domain Dimer of the Wild Type and Phosphorylated Ser356 Sequences. I. In Solution by Atomistic Simulations by Derreumaux, Philippe, Man, Viet Hoang, Wang, Junmei, Nguyen, Phuong H

“…In Alzheimer’s disease, neurofibrillary lesions correlate with cognitive deficits and consist of inclusions of tau protein with cross-β structure. A stable…”
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Recent Computational Advances Regarding Amyloid-β and Tau Membrane Interactions in Alzheimer’s Disease by Nguyen, Phuong H, Derreumaux, Philippe

“…The interactions of amyloid proteins with membranes have been subject to many experimental and computational studies, as these interactions contribute in part…”
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Effects of All-Atom Molecular Mechanics Force Fields on Amyloid Peptide Assembly: The Case of Aβ16–22 Dimer by Man, Viet Hoang, He, Xibing, Derreumaux, Philippe, Ji, Beihong, Xie, Xiang-Qun, Nguyen, Phuong H, Wang, Junmei

“…We investigated the effects of 17 widely used atomistic molecular mechanics force fields (MMFFs) on the structures and kinetics of amyloid peptide assembly. To…”
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Computer Simulations Aimed at Exploring Protein Aggregation and Dissociation by Nguyen, Phuong H, Derreumaux, Philippe

“…Protein aggregation can lead to well-defined structures that are functional, but is also the cause of the death of neuron cells in many neurodegenerative…”
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Disassembly of Amyloid Fibril with Infrared Free Electron Laser by Kawasaki, Takayasu, Tsukiyama, Koichi, Nguyen, Phuong H

“…Amyloid fibril causes serious amyloidosis such as neurodegenerative diseases. The structure is composed of rigid β-sheet stacking conformation which makes it…”
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Effect of Cholesterol Molecules on Aβ1-42 Wild-Type and Mutants Trimers by Nguyen, Trung Hai, Nguyen, Phuong H, Ngo, Son Tung, Derreumaux, Philippe

“…Alzheimer's disease displays aggregates of the amyloid-beta (Aβ) peptide in the brain, and there is increasing evidence that cholesterol may contribute to the…”
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Exploring the Use of Quality Control Plans for Alternative Contracting Methods in Highway Projects by Nguyen, Phuong H. D., Tran, Daniel

“…Quality control (QC) is an essential component of quality assurance (QA) programs used to monitor and ensure the highway construction projects’ quality. After…”
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Household food insecurity is associated with higher child undernutrition in Bangladesh, Ethiopia, and Vietnam, but the effect is not mediated by child dietary diversity by Ali, Disha, Saha, Kuntal K, Nguyen, Phuong H, Diressie, Michael T, Ruel, Marie T, Menon, Purnima, Rawat, Rahul

“…Household food insecurity (HFI) is a recognized underlying determinant of child undernutrition, but evidence of associations between HFI and child…”
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Visible light-induced switching of soft matter materials properties based on thioindigo photoswitches by Walden, Sarah L., Nguyen, Phuong H. D., Li, Hao-Kai, Liu, Xiaogang, Le, Minh T. N., Xian Jun, Loh, Barner-Kowollik, Christopher, Truong, Vinh X.

“…Thioindigos are visible light responsive photoswitches with excellent spatial control over the conformational change between their trans- and cis- isomers…”
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Conformational Ensembles of the Wild-Type and S8C Aβ1–42 Dimers by Man, Viet Hoang, Nguyen, Phuong H, Derreumaux, Philippe

“…We characterized the dimer of the amyloid-β wild-type (WT) peptide, Aβ, of 42 residues and its disulfide-bond-locked double mutant (S8C) by replica exchange…”
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Factors influencing maternal nutrition practices in a large scale maternal, newborn and child health program in Bangladesh by Nguyen, Phuong H, Sanghvi, Tina, Kim, Sunny S, Tran, Lan M, Afsana, Kaosar, Mahmud, Zeba, Aktar, Bachera, Menon, Purnima

“…Improving maternal nutrition practices during pregnancy is essential to save lives and improve health outcomes for both mothers and babies. This paper examines…”
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Structure and Dynamics of the Homologous Series of Alanine Peptides:  A Joint Molecular Dynamics/NMR Study by Graf, Jürgen, Nguyen, Phuong H, Stock, Gerhard, Schwalbe, Harald

“…The φ,ψ backbone angle distribution of small homopolymeric model peptides is investigated by a joint molecular dynamics (MD) simulation and heteronuclear NMR…”
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Dihedral angle principal component analysis of molecular dynamics simulations by Altis, Alexandros, Nguyen, Phuong H, Hegger, Rainer, Stock, Gerhard

“…It has recently been suggested by Mu et al. [Proteins 58, 45 (2005)] to use backbone dihedral angles instead of Cartesian coordinates in a principal component…”
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Structures of the Alzheimer’s Wild-Type Aβ1-40 Dimer from Atomistic Simulations by Tarus, Bogdan, Tran, Thanh T, Nasica-Labouze, Jessica, Sterpone, Fabio, Nguyen, Phuong H, Derreumaux, Philippe

“…We have studied the dimer of amyloid beta peptide Aβ of 40 residues by means of all-atom replica exchange molecular dynamics. The Aβ-dimers have been found to…”
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TSS Removal Efficiency and Permeability Degradation of Sand Filters in Permeable Pavement by Nguyen, Phuong T-H, Kim, Jongyeong, Ahn, Jaehun

“…Permeable pavement is a highly effective technology in Low-Impact Development (LID) for managing stormwater runoff, which helps mitigate environmental impacts…”
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Fuzzy Set Theory Approach to Classify Highway Project Characteristics for Delivery Selection by Nguyen, Phuong H. D, Tran, Daniel, Lines, Brian C

“…AbstractSelecting an appropriate delivery method for highway projects is a complex decision process. Delivery decisions typically involve evaluating both…”
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