Search Results - "Ngoc Tam L. Tran"

Cross-Disciplinary Detection and Analysis of Network Motifs by Tran, Ngoc Tam L, DeLuccia, Luke, McDonald, Aidan F., Huang, Chun-Hsi

“…The detection of network motifs has recently become an important part of network analysis across all disciplines. In this work, we detected and analyzed…”
Get full text

MODSIDE: a motif discovery pipeline and similarity detector by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Previous studies demonstrate the usefulness of using multiple tools and methods for improving the accuracy of motif detection. Over the past years, numerous…”
Get full text

MOTIFSIM: A web tool for detecting similarity in multiple DNA motif datasets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Currently, there are a number of motif detection tools available that possess unique functionality. These tools often report different motifs, and therefore…”
Get full text

Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq by Tran, Ngoc Tam L., Huang, Chun-Hsi

“…Recent study has identified the cis-regulatory elements in the mouse genome as well as their genomic localizations. Recent discoveries have shown the…”
Get full text

A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…ChIP-Seq (chromatin immunoprecipitation sequencing) has provided the advantage for finding motifs as ChIP-Seq experiments narrow down the motif finding to…”
Get full text

MOTIFSIM 2.1: An Enhanced Software Platform for Detecting Similarity in Multiple DNA Motif Data Sets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Finding binding site motifs plays an important role in bioinformatics as it reveals the transcription factors that control the gene expression. The development…”
Get more information

Current innovations and future challenges of network motif detection by Tran, Ngoc Tam L, Mohan, Sominder, Xu, Zhuoqing, Huang, Chun-Hsi

“…Network motif detection is the search for statistically overrepresented subgraphs present in a larger target network. They are thought to represent key…”
Get full text

Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…We developed the cloud-based MOTIFSIM on Amazon Web Services (AWS) cloud. The tool is an extended version from our web-based tool version 2.0, which was…”
Get more information

Performance evaluation for MOTIFSIM by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Previous studies show various results obtained from different motif finders for an identical dataset. This is largely due to the fact that these tools use…”
Get full text

Gene expression and gene ontology enrichment analysis for H3K4me3 and H3K4me1 in mouse liver and mouse embryonic stem cell using ChIP-Seq and RNA-Seq by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Recent study has identified the tit-regulatory elements in the mouse genome as well as their genomic localizations. Recent discoveries have shown the…”
Get full text

Cross-Disciplinary Detection and Analysis of Network Motifs by Ngoc Tam L. Tran, Luke DeLuccia, Aidan F. McDonald, Chun-Hsi Huang

Get full text