Search Results - "Ngoc Tam, Tran"

Levitin-Polyak well-posedness for vector optimization problems in linear spaces by Quoc Anh, Lam, Huu Danh, Nguyen, Ngoc Tam, Tran

“…In this paper, we deal with vector optimization problems where the images of the objective maps are given in linear spaces not endowed with any topological…”
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A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…ChIP-Seq (chromatin immunoprecipitation sequencing) has provided the advantage for finding motifs as ChIP-Seq experiments narrow down the motif finding to…”
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MODSIDE: a motif discovery pipeline and similarity detector by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Previous studies demonstrate the usefulness of using multiple tools and methods for improving the accuracy of motif detection. Over the past years, numerous…”
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Hölder continuity of solution maps to parametric set-valued Ky Fan inequalities by Tam, Tran Ngoc

“…We first introduce notions of strong t-quasiconvexity and strong t-quasiconvex-likeness along with relaxed Hölder continuity with respect to an ordering cone…”
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Integration of the Butina algorithm and ensemble learning strategies for the advancement of a pharmacophore ligand-based model: an in silico investigation of apelin agonists by Tran, Xuan-Truc Dinh, Phan, Tieu-Long, To, Van-Thinh, Tran, Ngoc-Vi Nguyen, Nguyen, Nhu-Ngoc Song, Nguyen, Dong-Nghi Hoang, Tran, Ngoc-Tam Nguyen, Truong, Tuyen Ngoc

“…3D pharmacophore models describe the ligand's chemical interactions in their bioactive conformation. They offer a simple but sophisticated approach to decipher…”
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On Hölder continuity of approximate solution maps to vector equilibrium problems by QUOC ANH, Lam, TRUNG NGUYEN, Kien, NGOC TAM, Tran

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MOTIFSIM: A web tool for detecting similarity in multiple DNA motif datasets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Currently, there are a number of motif detection tools available that possess unique functionality. These tools often report different motifs, and therefore…”
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Cross-Disciplinary Detection and Analysis of Network Motifs by Tran, Ngoc Tam L, DeLuccia, Luke, McDonald, Aidan F., Huang, Chun-Hsi

“…The detection of network motifs has recently become an important part of network analysis across all disciplines. In this work, we detected and analyzed…”
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On Hölder continuity of solution maps to parametric vector Ky Fan inequalities by Tam, Tran Ngoc

“…In this paper, we first introduce the notion of strong quasiconvexity of a vector-valued map. Then, this new condition is utilized to study the existence and…”
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Human and Insect Cell-Produced Recombinant Adeno-Associated Viruses Show Differences in Genome Heterogeneity by Tran, Ngoc Tam, Lecomte, Emilie, Saleun, Sylvie, Namkung, Suk, Robin, Cécile, Weber, Kristina, Devine, Eric, Blouin, Veronique, Adjali, Oumeya, Ayuso, Eduard, Gao, Guangping, Penaud-Budloo, Magalie, Tai, Phillip W L

“…In the past two decades, adeno-associated virus (AAV) vector manufacturing has made remarkable advancements to meet large-scale production demands for…”
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On Hölder calmness and Hölder well-posedness for optimal control problems by Anh, Lam Quoc, Tai, Vo Thanh, Tam, Tran Ngoc

“…In this paper, we consider parametric optimal control problems with linear state equations and control constraints. Applying the KKM fixed point theorem and…”
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MOTIFSIM 2.1: An Enhanced Software Platform for Detecting Similarity in Multiple DNA Motif Data Sets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Finding binding site motifs plays an important role in bioinformatics as it reveals the transcription factors that control the gene expression. The development…”
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Current innovations and future challenges of network motif detection by Tran, Ngoc Tam L, Mohan, Sominder, Xu, Zhuoqing, Huang, Chun-Hsi

“…Network motif detection is the search for statistically overrepresented subgraphs present in a larger target network. They are thought to represent key…”
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Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…We developed the cloud-based MOTIFSIM on Amazon Web Services (AWS) cloud. The tool is an extended version from our web-based tool version 2.0, which was…”
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Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq by Tran, Ngoc Tam L., Huang, Chun-Hsi

“…Recent study has identified the cis-regulatory elements in the mouse genome as well as their genomic localizations. Recent discoveries have shown the…”
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On the stability of approximate solutions to set-valued equilibrium problems by Anh, Lam Quoc, Duoc, Pham Thanh, Tam, Tran Ngoc

“…In this paper, we consider set-valued equilibrium problems in Hausdorff locally convex topological vector spaces. Based on linear scalarization techniques for…”
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Semicontinuity of Solutions and Well-Posedness Under Perturbations for Equilibrium Problems with Nonlinear Inequality Constraints by Anh, Lam Quoc, Linh, Ha Manh, Tam, Tran Ngoc

“…In this paper, we first study several properties of nonlinear inequality constraints. These properties are employed to investigate the semicontinuity of…”
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Querying Recombination Junctions of Replication-Competent Adeno-Associated Viruses in Gene Therapy Vector Preparations with Single Molecule, Real-Time Sequencing by Yip, Mitchell, Chen, Jing, Zhi, Yan, Tran, Ngoc Tam, Namkung, Suk, Pastor, Eric, Gao, Guangping, Tai, Phillip W L

“…Clinical-grade preparations of adeno-associated virus (AAV) vectors used for gene therapy typically undergo a series of diagnostics to determine titer, purity,…”
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AAV-Genome Population Sequencing of Vectors Packaging CRISPR Components Reveals Design-Influenced Heterogeneity by Tran, Ngoc Tam, Heiner, Cheryl, Weber, Kristina, Weiand, Michael, Wilmot, Daniella, Xie, Jun, Wang, Dan, Brown, Alexander, Manokaran, Sangeetha, Su, Qin, Zapp, Maria L., Gao, Guangping, Tai, Phillip W.L.

“…The gene therapy field has been galvanized by two technologies that have revolutionized treating genetic diseases: vectors based on adeno-associated viruses…”
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Performance evaluation for MOTIFSIM by Tran, Ngoc Tam L, Huang, Chun-Hsi

“…Previous studies show various results obtained from different motif finders for an identical dataset. This is largely due to the fact that these tools use…”
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