Search Results - "Nezami, R"

Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller by Xu, Chang, Nezami Ranjbar, Mohammad R, Wu, Zhong, DiCarlo, John, Wang, Yexun

“…Detection of DNA mutations at very low allele fractions with high accuracy will significantly improve the effectiveness of precision medicine for cancer…”
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Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis by Ressom, Habtom W., Xiao, Jun Feng, Tuli, Leepika, Varghese, Rency S., Zhou, Bin, Tsai, Tsung-Heng, Nezami Ranjbar, Mohammad R., Zhao, Yi, Wang, Jinlian, Di Poto, Cristina, Cheema, Amrita K., Tadesse, Mahlet G., Goldman, Radoslav, Shetty, Kirti

“…[Display omitted] ► We analyzed sera from HCC and cirrhotic patients by LC–MS in three experiments. ► Metabolites with significant and consistent changes in…”
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An inverse method for mechanical characterization of heterogeneous diseased arteries using intravascular imaging by Narayanan, Bharath, Olender, Max L., Marlevi, David, Edelman, Elazer R., Nezami, Farhad R.

“…The increasing prevalence of finite element (FE) simulations in the study of atherosclerosis has spawned numerous inverse FE methods for the mechanical…”
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GC-MS Based Plasma Metabolomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma in Egyptian Cohort by Nezami Ranjbar, Mohammad R, Luo, Yue, Di Poto, Cristina, Varghese, Rency S, Ferrarini, Alessia, Zhang, Chi, Sarhan, Naglaa I, Soliman, Hanan, Tadesse, Mahlet G, Ziada, Dina H, Roy, Rabindra, Ressom, Habtom W

“…This study evaluates changes in metabolite levels in hepatocellular carcinoma (HCC) cases vs. patients with liver cirrhosis by analysis of human blood plasma…”
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LC–MS Based Serum Metabolomics for Identification of Hepatocellular Carcinoma Biomarkers in Egyptian Cohort by Xiao, Jun Feng, Varghese, Rency S, Zhou, Bin, Nezami Ranjbar, Mohammad R, Zhao, Yi, Tsai, Tsung-Heng, Di Poto, Cristina, Wang, Jinlian, Goerlitz, David, Luo, Yue, Cheema, Amrita K, Sarhan, Naglaa, Soliman, Hanan, Tadesse, Mahlet G, Ziada, Dina Hazem, Ressom, Habtom W

“…Although hepatocellular carcinoma (HCC) has been subjected to continuous investigation and its symptoms are well-known, early stage diagnosis of this disease…”
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Understanding TAVR device expansion as it relates to morphology of the bicuspid aortic valve: A simulation study by Kusner, Jonathan, Luraghi, Giulia, Khodaee, Farhan, Rodriguez Matas, José Félix, Migliavacca, Francesco, Edelman, Elazer R, Nezami, Farhad R

“…The bicuspid aortic valve (BAV) is a common and heterogeneous congenital heart abnormality that is often complicated by aortic stenosis. Although initially…”
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Metabolomic Characterization of Hepatocellular Carcinoma in Patients with Liver Cirrhosis for Biomarker Discovery by Di Poto, Cristina, Ferrarini, Alessia, Zhao, Yi, Varghese, Rency S, Tu, Chao, Zuo, Yiming, Wang, Minkun, Nezami Ranjbar, Mohammad R, Luo, Yue, Zhang, Chi, Desai, Chirag S, Shetty, Kirti, Tadesse, Mahlet G, Ressom, Habtom W

“…Metabolomics plays an important role in providing insight into the etiology and mechanisms of hepatocellular carcinoma (HCC). This is accomplished by a…”
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SIMAT: GC-SIM-MS data analysis tool by Ranjbar, Mohammad R Nezami, Di Poto, Cristina, Wang, Yue, Ressom, Habtom W

“…Gas chromatography coupled with mass spectrometry (GC-MS) is one of the technologies widely used for qualitative and quantitative analysis of small molecules…”
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A platform for high-fidelity patient-specific structural modelling of atherosclerotic arteries: from intravascular imaging to three-dimensional stress distributions by Kadry, Karim, Olender, Max L., Marlevi, David, Edelman, Elazer R., Nezami, Farhad R.

“…The pathophysiology of atherosclerotic lesions, including plaque rupture triggered by mechanical failure of the vessel wall, depends directly on the plaque…”
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Implementation of proteomics for cancer research: past, present, and future by Karimi, Parisa, Shahrokni, Armin, Ranjbar, Mohammad R Nezami

“…Cancer is the leading cause of the death, accounts for about 13% of all annual deaths worldwide. Many different fields of science are collaborating together…”
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Aortic Dissection is Determined by Specific Shape and Hemodynamic Interactions by Williams, Jessica G., Marlevi, David, Bruse, Jan L., Nezami, Farhad R., Moradi, Hamed, Fortunato, Ronald N., Maiti, Spandan, Billaud, Marie, Edelman, Elazer R., Gleason, Thomas G.

“…The aim of this study was to determine whether specific three-dimensional aortic shape features, extracted via statistical shape analysis (SSA), correlate with…”
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Acute Stent-Induced Endothelial Denudation: Biomechanical Predictors of Vascular Injury by Conway, Claire, Nezami, Farhad R., Rogers, Campbell, Groothuis, Adam, Squire, James C., Edelman, Elazer R.

“…Recent concern for local drug delivery and withdrawal of the first Food and Drug Administration-approved bioresorbable scaffold emphasizes the need to optimize…”
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Metabolomic profiling of breast tumors using ductal fluid by Do Canto, Luisa Matos, Marian, Catalin, Varghese, Rency S, Ahn, Jaeil, Da Cunha, Patricia A, Willey, Shawna, Sidawy, Mary, Rone, Janice D, Cheema, Amrita K, Luta, George, Nezami ranjbar, Mohammad R, Ressom, Habtom W, Haddad, Bassem R

“…Identification of new biomarkers for breast cancer remains critical in order to enhance early detection of the disease and improve its prognosis. Towards this…”
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Predicting one-year left ventricular mass index regression following transcatheter aortic valve replacement in patients with severe aortic stenosis: A new era is coming by Asheghan, Mohammad Mostafa, Javadikasgari, Hoda, Attary, Taraneh, Rouhollahi, Amir, Straughan, Ross, Willi, James Noel, Awal, Rabina, Sabe, Ashraf, de la Cruz, Kim I, Nezami, Farhad R

“…Aortic stenosis (AS) is the most common valvular heart disease in the western world, particularly worrisome with an ever-aging population wherein postoperative…”
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Impact and implications of mixed plaque class in automated characterization of complex atherosclerotic lesions by Olender, Max L., Niu, Yanan, Marlevi, David, Edelman, Elazer R., Nezami, Farhad R.

“…Atherosclerosis is a complex disease altering vasculature morphology, and subsequently flow, with progressive plaque formation, mural disruption, and lumen…”
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Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS by Nezami Ranjbar, Mohammad R., Tadesse, Mahlet G., Yue Wang, Ressom, Habtom W.

“…We introduce a new method for normalization of data acquired by liquid chromatography coupled with mass spectrometry (LC-MS) in label-free differential…”
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Gaussian process regression model for normalization of LC-MS data using scan-level information by Nezami Ranjbar, Mohammad R, Zhao, Yi, Tadesse, Mahlet G, Wang, Yue, Ressom, Habtom W

“…Differences in sample collection, biomolecule extraction, and instrument variability introduce bias to data generated by liquid chromatography coupled with…”
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Framework for lumen-based nonrigid tomographic coregistration of intravascular images by Karmakar, Abhishek, Olender, Max L., Marlevi, David, Shlofmitz, Evan, Shlofmitz, Richard A., Edelman, Elazer R., Nezami, Farhad R.

“…Purpose: Modern medical imaging enables clinicians to effectively diagnose, monitor, and treat diseases. However, clinical decision-making often relies on…”
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A transformer-based pyramid network for coronary calcified plaque segmentation in intravascular optical coherence tomography images by Liu, Yiqing, Nezami, Farhad R., Edelman, Elazer R.

“…Characterizing coronary calcified plaque (CCP) provides essential insight into diagnosis and treatment of atherosclerosis. Intravascular optical coherence…”
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Ion annotation-assisted analysis of LC-MS based metabolomic experiment by Varghese, Rency S, Zhou, Bin, Nezami Ranjbar, Mohammad R, Zhao, Yi, Ressom, Habtom W

“…Analysis of multiple LC-MS based metabolomic studies is carried out to determine overlaps and differences among various experiments. For example, in large…”
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