Search Results - "Newberry, Kimberly"

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation by Reddy, Timothy E, Pauli, Florencia, Sprouse, Rebekka O, Neff, Norma F, Newberry, Kimberly M, Garabedian, Michael J, Myers, Richard M

“…The glucocorticoid steroid hormone cortisol is released by the adrenal glands in response to stress and serves as a messenger in circadian rhythms…”
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Occupancy maps of 208 chromatin-associated proteins in one human cell type by Partridge, E. Christopher, Chhetri, Surya B., Prokop, Jeremy W., Ramaker, Ryne C., Jansen, Camden S., Goh, Say-Tar, Mackiewicz, Mark, Newberry, Kimberly M., Brandsmeier, Laurel A., Meadows, Sarah K., Messer, C. Luke, Hardigan, Andrew A., Coppola, Candice J., Dean, Emma C., Jiang, Shan, Savic, Daniel, Mortazavi, Ali, Wold, Barbara J., Myers, Richard M., Mendenhall, Eric M.

“…Transcription factors are DNA-binding proteins that have key roles in gene regulation 1 , 2 . Genome-wide occupancy maps of transcriptional regulators are…”
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Does semantic knowledge influence event segmentation and recall of text? by Newberry, Kimberly M., Bailey, Heather R.

“…Knowledge benefits episodic memory, particularly when provided before encoding (Anderson & Pichert in Journal of Verbal Learning and Verbal Behavior , 17 (1),…”
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Influences of domain knowledge on segmentation and memory by Newberry, Kimberly M., Feller, Daniel P., Bailey, Heather R.

“…Much research has shown that experts possess superior memory in their domain of expertise. This memory benefit has been proposed to be the result of various…”
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CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins by Savic, Daniel, Partridge, E Christopher, Newberry, Kimberly M, Smith, Sophia B, Meadows, Sarah K, Roberts, Brian S, Mackiewicz, Mark, Mendenhall, Eric M, Myers, Richard M

“…Chromatin immunoprecipitation followed by next-generation DNA sequencing (ChIP-seq) is a widely used technique for identifying transcription factor (TF)…”
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Differential effects of knowledge and aging on the encoding and retrieval of everyday activities by Smith, Maverick E., Newberry, Kimberly M., Bailey, Heather R.

“…We deconstruct continuous streams of action into smaller, meaningful events. Research has shown that the ability to segment continuous activity into such…”
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Semantic knowledge attenuates age-related differences in event segmentation and episodic memory by Pitts, Barbara L., Smith, Maverick E., Newberry, Kimberly M., Bailey, Heather R.

“…While semantic and episodic memory may be distinct memory systems, their interdependence is substantial. For instance, decades of work have shown that semantic…”
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Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of Protocadherin-α gene expression by Monahan, Kevin, Rudnick, Noam D., Kehayova, Polina D., Pauli, Florencia, Newberry, Kimberly M., Myers, Richard M., Maniatis, Tom

“…Extraordinary single-cell diversity is generated in the vertebrate nervous system by the combinatorial expression of the clustered protocadherin genes (Pcdhα,…”
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The effects of domain knowledge and event structure on event processing by Feller, Daniel P., Kurby, Christopher A., Newberry, Kimberly M., Schwan, Stephan, Magliano, Joseph P.

“…Research suggests that domain knowledge facilitates memory for domain-specific information through two mechanisms: differentiation, which involves the ability…”
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Intricate interplay between astrocytes and motor neurons in ALS by Phatnani, Hemali P, Guarnieri, Paolo, Friedman, Brad A, Carrasco, Monica A, Muratet, Michael, O'Keeffe, Sean, Nwakeze, Chiamaka, Pauli-Behn, Florencia, Newberry, Kimberly M, Meadows, Sarah K, Tapia, Juan Carlos, Myers, Richard M, Maniatis, Tom

“…ALS results from the selective and progressive degeneration of motor neurons. Although the underlying disease mechanisms remain unknown, glial cells have been…”
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Effects of sequence variation on differential allelic transcription factor occupancy and gene expression by Reddy, Timothy E, Gertz, Jason, Pauli, Florencia, Kucera, Katerina S, Varley, Katherine E, Newberry, Kimberly M, Marinov, Georgi K, Mortazavi, Ali, Williams, Brian A, Song, Lingyun, Crawford, Gregory E, Wold, Barbara, Willard, Huntington F, Myers, Richard M

“…A complex interplay between transcription factors (TFs) and the genome regulates transcription. However, connecting variation in genome sequence with variation…”
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Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium by Gao, Xia, Vockley, Christopher M., Pauli, Florencia, Newberry, Kimberly M., Xue, Yan, Randell, Scott H., Reddy, Timothy E., Hogan, Brigid L. M.

“…Most of the airways of the human lung are lined by an epithelium made up of ciliated and secretory luminal cells and undifferentiated basal progenitor cells…”
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Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells by Moyers, Belle A, Partridge, E Christopher, Mackiewicz, Mark, Betti, Michael J, Darji, Roshan, Meadows, Sarah K, Newberry, Kimberly M, Brandsmeier, Laurel A, Wold, Barbara J, Mendenhall, Eric M, Myers, Richard M

“…Transcription factors (TFs) are -acting proteins that bind -regulatory elements (CREs) in DNA to control gene expression. Here, we analyzed the genomic…”
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Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands by Roberts, Brian S, Partridge, E Christopher, Moyers, Bryan A, Agarwal, Vikram, Newberry, Kimberly M, Martin, Beth K, Shendure, Jay, Myers, Richard M, Cooper, Gregory M

“…Massively parallel reporter assays (MPRAs) are useful tools to characterize regulatory elements in human genomes. An aspect of MPRAs that is not typically the…”
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Genomic regulation of invasion by STAT3 in triple negative breast cancer by McDaniel, Joy M, Varley, Katherine E, Gertz, Jason, Savic, Daniel S, Roberts, Brian S, Bailey, Sarah K, Shevde, Lalita A, Ramaker, Ryne C, Lasseigne, Brittany N, Kirby, Marie K, Newberry, Kimberly M, Partridge, E Christopher, Jones, Angela L, Boone, Braden, Levy, Shawn E, Oliver, Patsy G, Sexton, Katherine C, Grizzle, William E, Forero, Andres, Buchsbaum, Donald J, Cooper, Sara J, Myers, Richard M

“…Breast cancer is a heterogeneous disease comprised of four molecular subtypes defined by whether the tumor-originating cells are luminal or basal epithelial…”
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Epitope Tagging ChIP-Seq of DNA Binding Proteins Using CETCh-Seq by Meadows, Sarah K, Brandsmeier, Laurel A, Newberry, Kimberly M, Betti, Michael J, Nesmith, Amy S, Mackiewicz, Mark, Partridge, E Christopher, Mendenhall, Eric M, Myers, Richard M

“…Chromatin immunoprecipitation followed by next-generation DNA sequencing (ChIP-seq) has been used to identify transcription factor (TF) binding proteins…”
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Effects of BMS-902483, an α7 nicotinic acetylcholine receptor partial agonist, on cognition and sensory gating in relation to receptor occupancy in rodents by Pieschl, Rick L., Miller, Regina, Jones, Kelli M., Post-Munson, Debra J., Chen, Ping, Newberry, Kimberly, Benitex, Yulia, Molski, Thaddeus, Morgan, Daniel, McDonald, Ivar M., Macor, John E., Olson, Richard E., Asaka, Yukiko, Digavalli, Siva, Easton, Amy, Herrington, James, Westphal, Ryan S., Lodge, Nicholas J., Zaczek, Robert, Bristow, Linda J., Li, Yu-Wen

“…The α7 nicotinic acetylcholine receptor is thought to play an important role in human cognition. Here we describe the in vivo effects of BMS-902483, a…”
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Temporal Chunking Makes Life’s Events More Memorable by McGatlin, Kristen C., Newberry, Kimberly M., Bailey, Heather R.

“…Declines in episodic memory accompany both healthy aging and age-related diseases, such as dementia. Given that memory complaints are common in the aging…”
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NK1 receptor antagonism lowers occupancy requirement for antidepressant-like effects of SSRIs in the Gerbil forced swim test by Lelas, Snjezana, Li, Yu-Wen, Wallace-Boone, Tanya L., Taber, Matthew T., Newton, Amy E., Pieschl, Rick L., Davis, Carl D., Molski, Thaddeus F., Newberry, Kimberly S., Parker, Michael F., Gillman, Kevin W., Bronson, Joanne J., Macor, John E., Lodge, Nicholas J.

“…The known interactions between the serotonergic and neurokinin systems suggest that serotonin reuptake inhibitor (SSRIs) efficacy may be improved by…”
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Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium.[corrected] by Gao, Xia, Vockley, Christopher M, Pauli, Florencia, Newberry, Kimberly M, Xue, Yan, Randell, Scott H, Reddy, Timothy E, Hogan, Brigid L M

“…Most of the airways of the human lung are lined by an epithelium made up of ciliated and secretory luminal cells and undifferentiated basal progenitor cells…”
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