Search Results - "Neeraja, M"

Fruit-In-Sight: A deep learning-based framework for secondary metabolite class prediction using fruit and leaf images by Krishnan, Neeraja M, Kumar, Saroj, Panda, Binay

“…Fruits produce a wide variety of secondary metabolites of great economic value. Analytical measurement of the metabolites is tedious, time-consuming, and…”
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A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica by Krishnan, Neeraja M, Pattnaik, Swetansu, Jain, Prachi, Gaur, Prakhar, Choudhary, Rakshit, Vaidyanathan, Srividya, Deepak, Sa, Hariharan, Arun K, Krishna, Pg Bharath, Nair, Jayalakshmi, Varghese, Linu, Valivarthi, Naveen K, Dhas, Kunal, Ramaswamy, Krishna, Panda, Binay

“…The Azadirachta indica (neem) tree is a source of a wide number of natural products, including the potent biopesticide azadirachtin. In spite of its widespread…”
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Building flexible and robust analysis frameworks for molecular subtyping of cancers by Pedersen, Christina Bligaard, Campos, Benito, Rene, Lasse, Wegener, Helene Scheel, Krishnan, Neeraja M., Panda, Binay, Vitting‐Seerup, Kristoffer, Rossing, Maria, Bagger, Frederik Otzen, Olsen, Lars Rønn

“…Molecular subtyping is essential to infer tumor aggressiveness and predict prognosis. In practice, tumor profiling requires in‐depth knowledge of…”
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Utility of Acridine Orange staining for detection of bacteria from positive blood cultures by Neeraja, M., Lakshmi, V., Padmasri, C., Padmaja, K.

“…The diagnostic performance of AO stain was evaluated for the detection of bacteria and or fungi from positive blood cultures. The sensitivity of Gram stain…”
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The mutational landscape of early‐ and typical‐onset oral tongue squamous cell carcinoma by Campbell, Benjamin R., Chen, Zhishan, Faden, Daniel L., Agrawal, Nishant, Li, Ryan J., Hanna, Glenn J., Iyer, N. Gopalakrishna, Boot, Arnoud, Rozen, Steven G., Vettore, Andre L., Panda, Binay, Krishnan, Neeraja M., Pickering, Curtis R., Myers, Jeffrey N., Guo, Xingyi, Lang Kuhs, Krystle A.

“…Background The incidence of oral tongue squamous cell carcinoma (OTSCC) is increasing among younger birth cohorts. The etiology of early‐onset OTSCC (diagnosed…”
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Messenger RNA expressing PfCSP induces functional, protective immune responses against malaria in mice by Mallory, Katherine L., Taylor, Justin A., Zou, Xiaoyan, Waghela, Ishita N., Schneider, Cosette G., Sibilo, Michael Q., Punde, Neeraja M., Perazzo, Leah C., Savransky, Tatyana, Sedegah, Martha, Dutta, Sheetij, Janse, Chris J., Pardi, Norbert, Lin, Paulo J. C., Tam, Ying K., Weissman, Drew, Angov, Evelina

“…Human malaria affects the vast majority of the world’s population with the Plasmodium falciparum species causing the highest rates of morbidity and mortality…”
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Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment by Chaubal, Rohan, Gardi, Nilesh, Joshi, Shalaka, Pantvaidya, Gouri, Kadam, Rasika, Vanmali, Vaibhav, Hawaldar, Rohini, Talker, Elizabeth, Chitra, Jaya, Gera, Poonam, Bhatia, Dimple, Kalkar, Prajakta, Gurav, Mamta, Shetty, Omshree, Desai, Sangeeta, Krishnan, Neeraja M, Nair, Nita, Parmar, Vani, Dutt, Amit, Panda, Binay, Gupta, Sudeep, Badwe, Rajendra

“…Surgery exposes tumor tissue to severe hypoxia and mechanical stress leading to rapid gene expression changes in the tumor and its microenvironment, which…”
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A Minimal DNA Methylation Signature in Oral Tongue Squamous Cell Carcinoma Links Altered Methylation with Tumor Attributes by Krishnan, Neeraja M, Dhas, Kunal, Nair, Jayalakshmi, Palve, Vinayak, Bagwan, Jamir, Siddappa, Gangotri, Suresh, Amritha, Kekatpure, Vikram D, Kuriakose, Moni Abraham, Panda, Binay

“…Oral tongue squamous cell carcinomas (OTSCC) are a homogenous group of aggressive tumors in the head and neck region that spread early to lymph nodes and have…”
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An Improved Genome Assembly of Azadirachta indica A. Juss by Krishnan, Neeraja M, Jain, Prachi, Gupta, Saurabh, Hariharan, Arun K, Panda, Binay

“…Neem (Azadirachta indica A. Juss.), an evergreen tree of the Meliaceae family, is known for its medicinal, cosmetic, pesticidal and insecticidal properties. We…”
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Comparative analyses of putative toxin gene homologs from an Old World viper, Daboia russelii by Krishnan, Neeraja M, Panda, Binay

“…Availability of snake genome sequences has opened up exciting areas of research on comparative genomics and gene diversity. One of the challenges in studying…”
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Functional genomics screen with pooled shRNA library and gene expression profiling with extracts of Azadirachta indica identify potential pathways for therapeutic targets in head and neck squamous cell carcinoma by Krishnan, Neeraja M, Katoh, Hiroto, Palve, Vinayak, Pareek, Manisha, Sato, Reiko, Ishikawa, Shumpei, Panda, Binay

“…Tumor suppression by the extracts of (neem) works via anti-proliferation, cell cycle arrest, and apoptosis, demonstrated previously using cancer cell lines and…”
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A minimal set of internal control genes for gene expression studies in head and neck squamous cell carcinoma by Palve, Vinayak, Pareek, Manisha, Krishnan, Neeraja M, Siddappa, Gangotri, Suresh, Amritha, Kuriakose, Moni A, Panda, Binay

“…Selection of the right reference gene(s) is crucial in the analysis and interpretation of gene expression data. The aim of the present study was to discover…”
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COPS: a sensitive and accurate tool for detecting somatic Copy Number Alterations using short-read sequence data from paired samples by Krishnan, Neeraja M, Gaur, Prakhar, Chaudhary, Rakshit, Rao, Arjun A, Panda, Binay

“…Copy Number Alterations (CNAs) such as deletions and duplications; compose a larger percentage of genetic variations than single nucleotide polymorphisms or…”
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Unusual and rare manifestations of dengue during a dengue outbreak in a tertiary care hospital in South India by Neeraja, M, lakshmi, V, Teja, V. D, Lavanya, Vanjari, Priyanka, E. N, Subhada, K, Parida, M. M, Dash, P. K, Sharma, Sashi, Rao, P. V. L, Reddy, Gopal

“…Dengue is the most rapidly spreading mosquito-borne viral disease in the world, and as a larger proportion of the population is being affected, more unusual…”
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Augmenting transcriptome assembly by combining de novo and genome-guided tools by Jain, Prachi, Krishnan, Neeraja M, Panda, Binay

“…Researchers interested in studying and constructing transcriptomes, especially for non-model species, face the conundrum of choosing from a number of available…”
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Rapid detection and differentiation of dengue virus serotypes by NS1 specific reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay in patients presenting to a tertiary care hospital in Hyderabad, India by Neeraja, M., Lakshmi, V., Lavanya, Vanjari, Priyanka, E.N., Parida, M.M., Dash, P.K., Sharma, Shashi, Rao, P.V. Lakshmana, Reddy, Gopal

“…•This research article highlights the development of an improved, inexpensive, faster, sensitive and specific RT-LAMP assay for detection and serotyping of…”
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Craniofacial morphology of HIV-infected adolescents undergoing highly active antiretroviral therapy (HAART): An original research by Neeraja, M, Garabadu, Anand, Nayak, SubashChandra, Das, Monalisa, Dash, Debashish, Tiwari, Anurag, Nayyar, AbhishekSingh

“…OBJECTIVES: To analyze the craniofacial morphology in child patients and adolescents by evaluating the skeletal cephalometric profile of the HIV infected…”
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Mitochondrial replication origin stability and propensity of adjacent tRNA genes to form putative replication origins increase developmental stability in Lizards by Seligmann, Hervé, Krishnan, Neeraja M.

“…Secondary structure stability of mitochondrial origins of light‐strand replication (OL) presumably reduces delayed formation of light‐strand initiating…”
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A comparative approach to elucidate chloroplast genome replication by Krishnan, Neeraja M, Rao, Basuthkar J

“…Electron microscopy analyses of replicating chloroplast molecules earlier predicted bidirectional Cairns replication as the prevalent mechanism, perhaps…”
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RNAtor: an Android-based application for biologists to plan RNA sequencing experiments [version 2; peer review: 1 approved, 1 approved with reservations] by Kane, Shruti, Garg, Himanshu, Krishnan, Neeraja M, Singh, Aditya, Panda, Binay

“…RNA sequencing (RNA-seq) is a powerful technology that allows one to assess the RNA levels in a sample. Analysis of these levels can help in identifying novel…”
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