Search Results - "Nakamura, Shugo"

Maintenance and turnover of Sox2+ adult stem cells in the gustatory epithelium by Ohmoto, Makoto, Nakamura, Shugo, Wang, Hong, Jiang, Peihua, Hirota, Junji, Matsumoto, Ichiro

“…Continuous turnover of taste bud cells in the oral cavity underlies the homeostasis of taste tissues. Previous studies have demonstrated that Sox2 + stem cells…”
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Large-scale identification of genes involved in septal pore plugging in multicellular fungi by Mamun, Md. Abdulla Al, Cao, Wei, Nakamura, Shugo, Maruyama, Jun-ichi

“…Multicellular filamentous fungi have septal pores that allow cytoplasmic exchange, and thus connectivity, between neighboring cells in the filament. Hyphal…”
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Crystal structure of the 2‐iminoglutarate‐bound complex of glutamate dehydrogenase from Corynebacterium glutamicum by Tomita, Takeo, Yin, Lulu, Nakamura, Shugo, Kosono, Saori, Kuzuyama, Tomohisa, Nishiyama, Makoto

“…The NADP+‐dependent glutamate dehydrogenase from Corynebacterium glutamicum (CgGDH) is considered to be one of the key enzymes in the industrial fermentation…”
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Subnanoscale hydrophobic modulation of salt bridges in aqueous media by Chen, Shuo, Itoh, Yoshimitsu, Masuda, Takuya, Shimizu, Seishi, Zhao, Jun, Ma, Jing, Nakamura, Shugo, Okuro, Kou, Noguchi, Hidenori, Uosaki, Kohei, Aida, Takuzo

“…Polar interactions such as electrostatic forces and hydrogen bonds play an essential role in biological molecular recognition. On a protein surface, polar…”
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Folding free-energy landscape of a 10-residue mini-protein, chignolin by Satoh, Daisuke, Shimizu, Kentaro, Nakamura, Shugo, Terada, Tohru

“…Chignolin is an artificial mini-protein composed of 10 residues (GYDPETGTWG) that has been shown to cooperatively fold into a β-hairpin structure in water. We…”
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Comprehensive study of liposome-assisted synthesis of membrane proteins using a reconstituted cell-free translation system by Niwa, Tatsuya, Sasaki, Yoshihiro, Uemura, Eri, Nakamura, Shugo, Akiyama, Minato, Ando, Mitsuru, Sawada, Shinichi, Mukai, Sada-atu, Ueda, Takuya, Taguchi, Hideki, Akiyoshi, Kazunari

“…Membrane proteins play pivotal roles in cellular processes and are key targets for drug discovery. However, the reliable synthesis and folding of membrane…”
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Significance of NS5B Substitutions in Genotype 1b Hepatitis C Virus Evaluated by Bioinformatics Analysis by Uchida, Yoshihito, Nakamura, Shugo, Kouyama, Jun-Ichi, Naiki, Kayoko, Motoya, Daisuke, Sugawara, Kayoko, Inao, Mie, Imai, Yukinori, Nakayama, Nobuaki, Tomiya, Tomoaki, Hedskog, Charlotte, Brainard, Diana, Mo, Hongmei, Mochida, Satoshi

“…To evaluate the effects of HCV NS5B amino acid substitutions on treatment outcome in Ledipasvir (LDV)/Sofosbuvir (SOF) for Japanese patients with genotype 1b…”
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Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures by Morita, Mizuki, Nakamura, Shugo, Shimizu, Kentaro

“…This article describes a new method for predicting ligand‐binding sites of proteins. The method involves calculating the van der Waals interaction energy…”
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Factors affecting the discharge destination of hip fracture patients who live alone and have been admitted to an inpatient rehabilitation unit by Hayashi, Hiroyuki, Iwai, Midori, Matsuoka, Hiroka, Nakashima, Daiki, Nakamura, Shugo, Kubo, Ayumi, Tomiyama, Naoki

“…[Purpose] (1) The aim of this study was to examine relations between clinical and functional assessment and discharge destination and (2) to identify the…”
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Prospects for Tertiary Structure Prediction of RNA Based on Secondary Structure Information by Yamasaki, Satoshi, Nakamura, Shugo, Fukui, Kazuhiko

“…We developed a method, called RNA Assembler using Secondary Structure Information Effectively (RASSIE), for predicting RNA tertiary structures using known…”
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Engineering the allosteric properties of archaeal non-phosphorylating glyceraldehyde-3-phosphate dehydrogenases by Ito, Fumiaki, Miyake, Masayuki, Fushinobu, Shinya, Nakamura, Shugo, Shimizu, Kentaro, Wakagi, Takayoshi

“…The archaeal non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN, EC 1.2.1.9) is a highly allosteric enzyme activated by glucose 1-phosphate…”
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Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase by Inoue, Kengo, Usami, Yusuke, Ashikawa, Yuji, Noguchi, Haruko, Umeda, Takashi, Yamagami-Ashikawa, Aiko, Horisaki, Tadafumi, Uchimura, Hiromasa, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro, Habe, Hiroshi, Yamane, Hisakazu, Fujimoto, Zui, Nojiri, Hideaki

“…Carbazole 1,9a-dioxygenase (CARDO), a Rieske nonheme iron oxygenase (RO), is a three-component system composed of a terminal oxygenase (Oxy), ferredoxin, and a…”
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Large-scale analysis of macromolecular crowding effects on protein aggregation using a reconstituted cell-free translation system by Niwa, Tatsuya, Sugimoto, Ryota, Watanabe, Lisa, Nakamura, Shugo, Ueda, Takuya, Taguchi, Hideki

“…Proteins must fold into their native structures in the crowded cellular environment, to perform their functions. Although such macromolecular crowding has been…”
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The Dysferlin Domain-Only Protein, Spo73, Is Required for Prospore Membrane Extension in Saccharomyces cerevisiae by Okumura, Yuuya, Nakamura, Tsuyoshi S, Tanaka, Takayuki, Inoue, Ichiro, Suda, Yasuyuki, Takahashi, Tetsuo, Nakanishi, Hideki, Nakamura, Shugo, Gao, Xiao-Dong, Tachikawa, Hiroyuki

“…Sporulation of Saccharomyces cerevisiae is a developmental process in which an ascus containing four haploid spores forms from a diploid cell. During this…”
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Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01 by Dong, Xuesong, Fushinobu, Shinya, Fukuda, Eriko, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro, Nojiri, Hideaki, Omori, Toshio, Shoun, Hirofumi, Wakagi, Takayoshi

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states by Morita, Mizuki, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro

“…Elucidating molecular recognition by proteins, such as in enzyme-substrate and receptor-ligand interactions, is a key to understanding biological phenomena. To…”
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Structure of the Terminal Oxygenase Component of Angular Dioxygenase, Carbazole 1,9a-Dioxygenase by Nojiri, Hideaki, Ashikawa, Yuji, Noguchi, Haruko, Nam, Jeong-Won, Urata, Masaaki, Fujimoto, Zui, Uchimura, Hiromasa, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro, Yoshida, Takako, Habe, Hiroshi, Omori, Toshio

“…Carbazole 1,9a-dioxygenase (CARDO) catalyzes the dihydroxylation of carbazole by angular position (C9a) carbon bonding to the imino nitrogen and its adjacent…”
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Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5 by Inoue-Ito, Sakura, Yajima, Shunsuke, Fushinobu, Shinya, Nakamura, Shugo, Ogawa, Tetsuhiro, Hidaka, Makoto, Masaki, Haruhiko

“…Colicin E5 cleaves tRNAs for Tyr, His, Asn and Asp in their anticodons to abolish protein synthesis in Escherichia coli. We previously showed how its…”
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Potential for assessing quality of protein structure based on contact number prediction by Ishida, Takashi, Nakamura, Shugo, Shimizu, Kentaro

“…We developed a novel knowledge‐based residue environment potential for assessing the quality of protein structures in protein structure prediction. The…”
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Development of a protein–ligand-binding site prediction method based on interaction energy and sequence conservation by Tsujikawa, Hiroto, Sato, Kenta, Wei, Cao, Saad, Gul, Sumikoshi, Kazuya, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro

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