Search Results - "Nakagawa, Shinichi"

Meta-analysis and the science of research synthesis by Gurevitch, Jessica, Koricheva, Julia, Nakagawa, Shinichi, Stewart, Gavin

“…Meta-analysis is the quantitative, scientific synthesis of research results. Since the term and modern approaches to research synthesis were first introduced…”
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Repeatability for Gaussian and non-Gaussian data: a practical guide for biologists by Nakagawa, Shinichi, Schielzeth, Holger

“…Repeatability (more precisely the common measure of repeatability, the intra‐class correlation coefficient, ICC) is an important index for quantifying the…”
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The coefficient of determination R2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded by Nakagawa, Shinichi, Johnson, Paul C. D., Schielzeth, Holger

“…The coefficient of determination R2 quantifies the proportion of variance explained by a statistical model and is an important summary statistic of biological…”
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rptR: repeatability estimation and variance decomposition by generalized linear mixed‐effects models by Stoffel, Martin A., Nakagawa, Shinichi, Schielzeth, Holger, Goslee, Sarah

“…Summary Intra‐class correlations (ICC) and repeatabilities (R) are fundamental statistics for quantifying the reproducibility of measurements and for…”
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A general and simple method for obtaining R2 from generalized linear mixed‐effects models by Nakagawa, Shinichi, Schielzeth, Holger, O'Hara, Robert B.

“…Summary The use of both linear and generalized linear mixed‐effects models (LMMs and GLMMs) has become popular not only in social and medical sciences, but…”
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A farewell to Bonferroni: the problems of low statistical power and publication bias by Nakagawa, Shinichi

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Questionable research practices in ecology and evolution by Fraser, Hannah, Parker, Tim, Nakagawa, Shinichi, Barnett, Ashley, Fidler, Fiona

“…We surveyed 807 researchers (494 ecologists and 313 evolutionary biologists) about their use of Questionable Research Practices (QRPs), including cherry…”
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partR2: partitioning R2 in generalized linear mixed models by Stoffel, Martin A, Nakagawa, Shinichi, Schielzeth, Holger

“…The coefficient of determination R2 quantifies the amount of variance explained by regression coefficients in a linear model. It can be seen as the…”
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The effects of sex hormones on immune function: a meta‐analysis by Foo, Yong Zhi, Nakagawa, Shinichi, Rhodes, Gillian, Simmons, Leigh W.

“…ABSTRACT The effects of sex hormones on immune function have received much attention, especially following the proposal of the immunocompetence handicap…”
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What determines species richness of parasitic organisms? A meta-analysis across animal, plant and fungal hosts by Kamiya, Tsukushi, O'Dwyer, Katie, Nakagawa, Shinichi, Poulin, Robert

“…ABSTRACT Although a small set of external factors account for much of the spatial variation in plant and animal diversity, the search continues for general…”
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Effect size, confidence interval and statistical significance: a practical guide for biologists by Nakagawa, Shinichi, Cuthill, Innes C.

“…Null hypothesis significance testing (NHST) is the dominant statistical approach in biology, although it has many, frequently unappreciated, problems. Most…”
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Global abundance estimates for 9,700 bird species by Callaghan, Corey T., Nakagawa, Shinichi, Cornwell, William K.

“…Quantifying the abundance of species is essential to ecology, evolution, and conservation. The distribution of species abundances is fundamental to numerous…”
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Ornaments are equally informative in male and female birds by Nolazco, Sergio, Delhey, Kaspar, Nakagawa, Shinichi, Peters, Anne

“…Female ornaments are often reduced, male-like traits. Although these were long perceived as non-functional, it is now broadly accepted that female ornaments…”
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Next steps after airing disagreement on a scientific issue with policy implications: a meta-analysis, multi-lab replication and adversarial collaboration by Nakagawa, Shinichi, Lagisz, Malgorzata

“…Canadian policymakers are interested in determining whether farmed Atlantic salmon, frequently infected with Piscine orthoreovirus (PRV), may threaten wild…”
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Molecular anatomy of the architectural NEAT1 noncoding RNA: The domains, interactors, and biogenesis pathway required to build phase‐separated nuclear paraspeckles by Hirose, Tetsuro, Yamazaki, Tomohiro, Nakagawa, Shinichi

“…Long noncoding RNAs (lncRNAs) are extremely diverse and have various significant physiological functions. lncRNAs generally associate with specific sets of…”
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Meta-evaluation of meta-analysis: ten appraisal questions for biologists by Nakagawa, Shinichi, Noble, Daniel W A, Senior, Alistair M, Lagisz, Malgorzata

“…Meta-analysis is a statistical procedure for analyzing the combined data from different studies, and can be a major source of concise up-to-date information…”
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Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu by Nakagawa, Shinichi, Yamazaki, Tomohiro, Hirose, Tetsuro

“…Paraspeckles are nuclear bodies built on an architectural long noncoding RNA, NEAT1, and a series of studies have revealed their molecular components, fine…”
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Robustness of linear mixed‐effects models to violations of distributional assumptions by Schielzeth, Holger, Dingemanse, Niels J., Nakagawa, Shinichi, Westneat, David F., Allegue, Hassen, Teplitsky, Céline, Réale, Denis, Dochtermann, Ned A., Garamszegi, László Zsolt, Araya‐Ajoy, Yimen G., Sutherland, Chris

“…Linear mixed‐effects models are powerful tools for analysing complex datasets with repeated or clustered observations, a common data structure in ecology and…”
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General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models by de Villemereuil, Pierre, Schielzeth, Holger, Nakagawa, Shinichi, Morrissey, Michael

“…Methods for inference and interpretation of evolutionary quantitative genetic parameters, and for prediction of the response to selection, are best developed…”
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Unusual semi‐extractability as a hallmark of nuclear body‐associated architectural noncoding RNAs by Chujo, Takeshi, Yamazaki, Tomohiro, Kawaguchi, Tetsuya, Kurosaka, Satoshi, Takumi, Toru, Nakagawa, Shinichi, Hirose, Tetsuro

“…NEAT1_2 long noncoding RNA (lncRNA) is the molecular scaffold of paraspeckle nuclear bodies. Here, we report an improved RNA extraction method: extensive…”
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