Search Results - "Nag, Rishi"

The genome of the vervet (Chlorocebus aethiops sabaeus) by Warren, Wesley C, Jasinska, Anna J, García-Pérez, Raquel, Svardal, Hannes, Tomlinson, Chad, Rocchi, Mariano, Archidiacono, Nicoletta, Capozzi, Oronzo, Minx, Patrick, Montague, Michael J, Kyung, Kim, Hillier, LaDeana W, Kremitzki, Milinn, Graves, Tina, Chiang, Colby, Hughes, Jennifer, Tran, Nam, Huang, Yu, Ramensky, Vasily, Choi, Oi-Wa, Jung, Yoon J, Schmitt, Christopher A, Juretic, Nikoleta, Wasserscheid, Jessica, Turner, Trudy R, Wiseman, Roger W, Tuscher, Jennifer J, Karl, Julie A, Schmitz, Jörn E, Zahn, Roland, O'Connor, David H, Redmond, Eugene, Nisbett, Alex, Jacquelin, Béatrice, Müller-Trutwin, Michaela C, Brenchley, Jason M, Dione, Michel, Antonio, Martin, Schroth, Gary P, Kaplan, Jay R, Jorgensen, Matthew J, Thomas, Gregg W C, Hahn, Matthew W, Raney, Brian J, Aken, Bronwen, Nag, Rishi, Schmitz, Juergen, Churakov, Gennady, Noll, Angela, Stanyon, Roscoe, Webb, David, Thibaud-Nissen, Francoise, Nordborg, Magnus, Marques-Bonet, Tomas, Dewar, Ken, Weinstock, George M, Wilson, Richard K, Freimer, Nelson B

“…We describe a genome reference of the African green monkey or vervet (Chlorocebus aethiops). This member of the Old World monkey (OWM) superfamily is uniquely…”
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htsget: a protocol for securely streaming genomic data by Kelleher, Jerome, Lin, Mike, Albach, C H, Birney, Ewan, Davies, Robert, Gourtovaia, Marina, Glazer, David, Gonzalez, Cristina Y, Jackson, David K, Kemp, Aaron, Marshall, John, Nowak, Andrew, Senf, Alexander, Tovar-Corona, Jaime M, Vikhorev, Alexander, Keane, Thomas M

“…Abstract Summary Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data…”
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Ensembl 2016 by Yates, Andrew, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J, Cunningham, Fiona, Aken, Bronwen L, Zerbino, Daniel R, Flicek, Paul

“…The Ensembl project (http://www.ensembl.org) is a system for genome annotation, analysis, storage and dissemination designed to facilitate the access of…”
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Ensembl 2017 by Aken, Bronwen L, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R, Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N, Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P, Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R, Flicek, Paul

“…Ensembl (www.ensembl.org) is a database and genome browser for enabling research on vertebrate genomes. We import, analyse, curate and integrate a diverse…”
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Ensembl 2015 by Cunningham, Fiona, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M J, Spudich, Giulietta, Trevanion, Stephen J, Yates, Andy, Zerbino, Daniel R, Flicek, Paul

“…Ensembl (http://www.ensembl.org) is a genomic interpretation system providing the most up-to-date annotations, querying tools and access methods for chordates…”
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Ensembl 2014 by Flicek, Paul, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Kulesha, Eugene, Martin, Fergal J, Maurel, Thomas, McLaren, William M, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet S, Ruffier, Magali, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen J, Vullo, Alessandro, Wilder, Steven P, Wilson, Mark, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Kinsella, Rhoda, Muffato, Matthieu, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zerbino, Daniel R, Searle, Stephen M J

“…Ensembl (http://www.ensembl.org) creates tools and data resources to facilitate genomic analysis in chordate species with an emphasis on human, major…”
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Ensembl 2013 by Flicek, Paul, Ahmed, Ikhlak, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fairley, Susan, Fitzgerald, Stephen, Gil, Laurent, García-Girón, Carlos, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Komorowska, Monika, Kulesha, Eugene, Longden, Ian, Maurel, Thomas, McLaren, William M, Muffato, Matthieu, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet Singh, Ritchie, Graham R S, Ruffier, Magali, Schuster, Michael, Sheppard, Daniel, Sobral, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen, White, Simon, Wilder, Steven P, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Dunham, Ian, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Johnson, Nathan, Kinsella, Rhoda, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zadissa, Amonida, Searle, Stephen M J

“…The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and…”
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The Ensembl gene annotation system by Aken, Bronwen L, Ayling, Sarah, Barrell, Daniel, Clarke, Laura, Curwen, Valery, Fairley, Susan, Fernandez Banet, Julio, Billis, Konstantinos, García Girón, Carlos, Hourlier, Thibaut, Howe, Kevin, Kähäri, Andreas, Kokocinski, Felix, Martin, Fergal J, Murphy, Daniel N, Nag, Rishi, Ruffier, Magali, Schuster, Michael, Tang, Y Amy, Vogel, Jan-Hinnerk, White, Simon, Zadissa, Amonida, Flicek, Paul, Searle, Stephen M J

“…The Ensembl gene annotation system has been used to annotate over 70 different vertebrate species across a wide range of genome projects. Furthermore, it…”
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Refget: standardized access to reference sequences by Yates, Andrew D, Adams, Jeremy, Chaturvedi, Somesh, Davies, Robert M, Laird, Matthew, Leinonen, Rasko, Nag, Rishi, Sheffield, Nathan C, Hofmann, Oliver, Keane, Thomas M

“…Abstract Motivation Reference sequences are essential in creating a baseline of knowledge for many common bioinformatics methods, especially those using…”
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GA4GH: International policies and standards for data sharing across genomic research and healthcare by Rehm, Heidi L., Smith, Lindsay, Adams, Jeremy B., Alterovitz, Gil, Babb, Lawrence J., Beauvais, Michael J.S., Beck, Tim, Beckmann, Jacques S., Bernick, David, Bonfield, James K., Bourque, Guillaume, Bowers, Sarion R., Brush, Matthew H., Bujold, David, Buske, Orion J., Cabili, Moran N., Carroll, Robert J., Casas-Silva, Esmeralda, Cherry, J. Michael, Chung, Justina, Clissold, Hayley L., Cook-Deegan, Robert M., Courtot, Mélanie, Davies, Robert M., Dolman, Lena I., Dursi, L. Jonathan, Eddy, James A., Ellrott, Kyle P., Fakhro, Khalid A., Flicek, Paul, Fore, Ian M., Freeberg, Mallory A., Freimuth, Robert R., Fuerth, Jonathan, Ghanaim, Elena M., Grossman, Robert L., Groza, Tudor, Guigó, Roderic, Gupta, Dipayan, Hamosh, Ada, Hartley, Dean Mitchell, Haussler, David, Hobb, Ashley E., Hunt, Sarah E., Jamuar, Saumya S., Joly, Yann, Jones, Steven J.M., Kanitz, Alexander, Kato, Kazuto, Kelleher, Jerome, Kerry, Giselle, Khor, Seik-Soon, Knoppers, Bartha M., Kosaki, Kenjiro, Lawson, Jonathan, Li, Stephanie, Lin, Michael F., Linden, Mikael, Mann, Alice L., Marshall, John, Middleton, Anna, Mulder, Nicola, Munoz-Torres, Monica C., Nag, Rishi, Niu, Jeffrey, Nyrönen, Tommi H., Oesterle, Sabine, Paglione, Laura A.D., Palumbo, Emilio, Parkinson, Helen E., Philippakis, Anthony A., Rambla, Jordi, Rendon, Augusto, Robinson, Peter N., Rodarmer, Kurt W., Rueda, Manuel, Rushton, Gregory A., Schuilenburg, Helen, Scollen, Serena, Smith, Albert V., Sofia, Heidi J., Spalding, Dylan, Spurdle, Amanda B., Tan, Patrick, Thomson, Alastair A., Tickle, Timothy L., Tokunaga, Katsushi, Törnroos, Juha, Upchurch, Sean, Guimera, Roman Valls, Varma, Susheel, Viner, Coby, Voisin, Craig, Wagner, Alex H., Walsh, Brian P., Williams, Marc S., Winkler, Eva C., Yamasaki, Chisato, Yung, Christina K., North, Kathryn

“…The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical advances by enabling the responsible sharing of clinical and genomic data…”
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Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate by Jasinska, Anna J, Zelaya, Ivette, Service, Susan K, Peterson, Christine B, Cantor, Rita M, Choi, Oi-Wa, DeYoung, Joseph, Eskin, Eleazar, Fairbanks, Lynn A, Fears, Scott, Furterer, Allison E, Huang, Yu S, Ramensky, Vasily, Schmitt, Christopher A, Svardal, Hannes, Jorgensen, Matthew J, Kaplan, Jay R, Villar, Diego, Aken, Bronwen L, Flicek, Paul, Nag, Rishi, Wong, Emily S, Blangero, John, Dyer, Thomas D, Bogomolov, Marina, Benjamini, Yoav, Weinstock, George M, Dewar, Ken, Sabatti, Chiara, Wilson, Richard K, Jentsch, J David, Warren, Wesley, Coppola, Giovanni, Woods, Roger P, Freimer, Nelson B

“…Nelson Freimer and colleagues analyze gene expression data from multiple tissue samples combined with genotype data from vervet monkeys to catalog expression…”
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Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate by Jasinska, Anna J., Zelaya, Ivette, Service, Susan K., Peterson, Christine B., Cantor, Rita M., Choi, Oi-Wa, DeYoung, Joseph, Eskin, Eleazar, Fairbanks, Lynn A., Fears, Scott, Furterer, Allison E., Huang, Yu S., Ramensky, Vasily, Schmitt, Christopher A., Svardal, Hannes, Jorgensen, Matthew J., Kaplan, Jay R., Villar, Diego, Aken, Bronwen L., Flicek, Paul, Nag, Rishi, Wong, Emily S., Blangero, John, Dyer, Thomas D., Bogomolov, Marina, Benjamini, Yoav, Weinstock, George M., Dewar, Ken, Sabatti, Chiara, Wilson, Richard K., Jentsch, J. David, Warren, Wesley, Coppola, Giovanni, Woods, Roger P., Freimer, Nelson B.

“…By analyzing multi-tissue gene expression and genome-wide genetic variation data in samples from a vervet monkey pedigree, we generated a transcriptome…”
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