Search Results - "Nadler, Walter"

Molecular Transport through Channels and Pores: Effects of in-Channel Interactions and Blocking by Bauer, Wolfgang R., Nadler, Walter

“…Facilitated translocation of molecules through channels and pores is of fundamental importance for transmembrane transport in biological systems. Several such…”
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Ancestral amphibian v2rs are expressed in the main olfactory epithelium by Syed, Adnan S., Sansone, Alfredo, Nadler, Walter, Manzini, Ivan, Korsching, Sigrun I.

“…Mammalian olfactory receptor families are segregated into different olfactory organs, with type 2 vomeronasal receptor (v2r) genes expressed in a basal layer…”
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Heat conduction and entropy production in a one-dimensional hard-particle gas by Grassberger, Peter, Nadler, Walter, Yang, Lei

“…We present large scale simulations for a one-dimensional chain of hard-point particles with alternating masses and correct several claims in recent literature…”
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Optimized Explicit-Solvent Replica Exchange Molecular Dynamics from Scratch by Nadler, Walter, Hansmann, Ulrich H. E

“…Replica exchange molecular dynamics (REMD) simulations have become an important tool to study proteins and other biological molecules in silico. However, such…”
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Thermodynamics of competitive molecular channel transport: application to artificial nuclear pores by Bauer, Wolfgang R, Nadler, Walter

“…In an analytical model channel transport is analyzed as a function of key parameters, determining efficiency and selectivity of particle transport in a…”
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Optimizing replica exchange moves for molecular dynamics by Nadler, Walter, Hansmann, Ulrich H E

“…We sketch the statistical physics framework of the replica exchange technique when applied to molecular dynamics simulations. In particular, we draw attention…”
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Nested Expression Domains for Odorant Receptors in Zebrafish Olfactory Epithelium by Weth, Franco, Nadler, Walter, Korsching, Sigrun

“…The mapping of high-dimensional olfactory stimuli onto the two-dimensional surface of the nasal sensory epithelium constitutes the first step in the neuronal…”
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Testing a new Monte Carlo algorithm for protein folding by Bastolla, Ugo, Frauenkron, Helge, Gerstner, Erwin, Grassberger, Peter, Nadler, Walter

“…We demonstrate that the recently proposed pruned‐enriched Rosenbluth method (PERM) (Grassberger, Phys. Rev. E 56:3682, 1997) leads to extremely efficient…”
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Dynamics and optimal number of replicas in parallel tempering simulations by Nadler, Walter, Hansmann, Ulrich H E

“…We study the dynamics of parallel tempering simulations, also known as the replica exchange technique, which has become the method of choice for simulation of…”
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Generalized ensemble and tempering simulations: A unified view by Nadler, Walter, Hansmann, Ulrich H. E.

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Microcanonical replica exchange molecular dynamics simulation of proteins by Kar, Parimal, Nadler, Walter, Hansmann, Ulrich H E

“…We present microcanonical replica exchange molecular dynamics simulations as an alternative to canonical ones. Its advantage is the easily tunable high…”
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Zebrafish crypt neurons project to a single, identified mediodorsal glomerulus by Ahuja, Gaurav, Ivandić, Ivan, Saltürk, Mehmet, Oka, Yuichiro, Nadler, Walter, Korsching, Sigrun I.

“…Crypt neurons are a third type of olfactory receptor neurons with a highly unusual “one cell type - one receptor” mode of expression, the same receptor being…”
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Scaling of Star Polymers with 1−80 Arms by Hsu, Hsiao-Ping, Nadler, Walter, Grassberger, Peter

“…We present large statistics simulations of 3-dimensional star polymers with up to f = 80 arms and with up to 4000 monomers per arm for small values of f. They…”
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Theory of the BOLD effect in the capillary region: An analytical approach for the determination ofT2 in the capillary network of myocardium by Bauer, Wolfgang R., Nadler, Walter, Bock, Michael, Schad, Lothar R., Wacker, Christian, Hartlep, Andreas, Ertl, Georg

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Ancestral amphibian v2r s are expressed in the main olfactory epithelium by Syed, Adnan S., Sansone, Alfredo, Nadler, Walter, Manzini, Ivan, Korsching, Sigrun I.

“…Mammalian olfactory receptor families are segregated into different olfactory organs, with type 2 vomeronasal receptor ( v2r ) genes expressed in a basal layer…”
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Dynamics and efficiency of Brownian rotors by Bauer, Wolfgang R, Nadler, Walter

“…Brownian rotors play an important role in biological systems and in future nanotechnological applications. However the mechanisms determining their dynamics,…”
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Backbone and side-chain ordering in a small protein by Wei, Yanjie, Nadler, Walter, Hansmann, Ulrich H E

“…We investigate the relation between backbone and side-chain ordering in a small protein. For this purpose, we have performed multicanonical simulations of the…”
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On the helix-coil transition in alanine based polypeptides in gas phase by Wei, Yanjie, Nadler, Walter, Hansmann, Ulrich H E

“…Using multicanonical simulations, the authors study the effect of charged end groups on helix formation in alanine based polypeptides. They confirm earlier…”
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Network analysis of the state space of discrete dynamical systems by Shreim, Amer, Grassberger, Peter, Nadler, Walter, Samuelsson, Björn, Socolar, Joshua E S, Paczuski, Maya

“…We study networks representing the dynamics of elementary 1D cellular automata (CA) on finite lattices. We analyze scaling behaviors of both local and global…”
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Side-chain and backbone ordering in a polypeptide by Wei, Yanjie, Nadler, Walter, Hansmann, Ulrich H E

“…We report results from multicanonical simulations of polyglutamic acid chains of length of ten residues. For this simple polypeptide we observe a decoupling of…”
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