Search Results - "NIMMO, Hugh G"

Entrainment of Arabidopsis roots to the light:dark cycle by light piping by Nimmo, Hugh G.

“…Correct operation of the plant circadian clock is crucial for optimal growth and development. Recent evidence has shown that the plant clock is tissue specific…”
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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome by Calixto, Cristiane P.G., Guo, Wenbin, James, Allan B., Tzioutziou, Nikoleta A., Entizne, Juan Carlos, Panter, Paige E., Knight, Heather, Nimmo, Hugh G., Zhang, Runxuan, Brown, John W.S.

“…Plants have adapted to tolerate and survive constantly changing environmental conditions by reprogramming gene expression The dynamics of the contribution of…”
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Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks by Bordage, Simon, Sullivan, Stuart, Laird, Janet, Millar, Andrew J., Nimmo, Hugh G.

“…Circadian clocks allow the temporal compartmentalization of biological processes. In Arabidopsis, circadian rhythms display organ specificity but the…”
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A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing by Zhang, Runxuan, Calixto, Cristiane P G, Marquez, Yamile, Venhuizen, Peter, Tzioutziou, Nikoleta A, Guo, Wenbin, Spensley, Mark, Entizne, Juan Carlos, Lewandowska, Dominika, Ten Have, Sara, Frei Dit Frey, Nicolas, Hirt, Heribert, James, Allan B, Nimmo, Hugh G, Barta, Andrea, Kalyna, Maria, Brown, John W S

“…Alternative splicing generates multiple transcript and protein isoforms from the same gene and thus is important in gene expression regulation. To date,…”
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Arabidopsis thaliana PRR7 Provides Circadian Input to the CCA1 Promoter in Shoots but not Roots by Nimmo, Hugh G., Laird, Janet

“…The core of the plant circadian clock involves multiple interlocking gene expression loops and post-translational controls along with inputs from light and…”
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Global spatial analysis of Arabidopsis natural variants implicates 5′UTR splicing of LATE ELONGATED HYPOCOTYL in responses to temperature by James, Allan B., Sullivan, Stuart, Nimmo, Hugh G.

“…How plants perceive and respond to temperature remains an important question in the plant sciences. Temperature perception and signal transduction may occur…”
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Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs by Calixto, Cristiane P G, Tzioutziou, Nikoleta A, James, Allan B, Hornyik, Csaba, Guo, Wenbin, Zhang, Runxuan, Nimmo, Hugh G, Brown, John W S

“…Plants re-program their gene expression when responding to changing environmental conditions. Besides differential gene expression, extensive alternative…”
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BHLH32 modulates several biochemical and morphological processes that respond to Pi starvation in Arabidopsis by Chen, Zhi-Hui, Nimmo, Gillian A, Jenkins, Gareth I, Nimmo, Hugh G

“…P(i) (inorganic phosphate) limitation severely impairs plant growth and reduces crop yield. Hence plants have evolved several biochemical and morphological…”
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How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY) by James, Allan B., Calixto, Cristiane P.G., Tzioutziou, Nikoleta A., Guo, Wenbin, Zhang, Runxuan, Simpson, Craig G., Jiang, Wenying, Nimmo, Gillian A., Brown, John W.S., Nimmo, Hugh G.

“…One of the ways in which plants can respond to temperature is via alternative splicing (AS). Previous work showed that temperature changes affected the…”
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AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana by Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.

“…RNA-sequencing (RNA-seq) allows global gene expression analysis at the individual transcript level. Accurate quantification of transcript variants generated by…”
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Arabidopsis CDPK-SnRK superfamily of protein kinases by Hrabak, E.M, Chan, C.W.M, Gribskov, M, Harper, J.F, Choi, J.H, Halford, N, Kudla, J, Luan, S, Nimmo, H.G, Sussman, M.R

“…The CDPK-SnRK superfamily consists of seven types of serine-threonine protein kinases: calcium-dependent protein kinase (CDPKs), CDPK-related kinases (CRKs),…”
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Control of the phosphorylation of phosphoenolpyruvate carboxylase in higher plants by Nimmo, Hugh G

“…Phosphoenolpyruvate (PEP) carboxylase is regulated by reversible phosphorylation in higher plants. Recently several genes encoding PEP carboxylase kinase have…”
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The regulation of phosphoenolpyruvate carboxylase in CAM plants by Nimmo, Hugh G

“…Phosphoenolpyruvate carboxylase catalyses the primary assimilation of CO2 in Crassulacean acid metabolism plants. It is activated by phosphorylation, and this…”
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Thermoplasticity in the plant circadian clock: How plants tell the time-perature by James, Allan B, Syed, Naeem Hasan, Brown, John W S, Nimmo, Hugh G

“…In the March 2012 issue of The Plant Cell we describe extensive alternative splicing (AS) of Arabidopsis circadian clock genes. Notably these distinct…”
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Conservation and Divergence of Circadian Clock Operation in a Stress-Inducible Crassulacean Acid Metabolism Species Reveals Clock Compensation against Stress by Boxall, Susanna F, Foster, Jonathan M, Bohnert, Hans J, Cushman, John C, Nimmo, Hugh G, Hartwell, James

“…One of the best-characterized physiological rhythms in plants is the circadian rhythm of CO₂ metabolism in Crassulacean acid metabolism (CAM) plants, which is…”
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The evening complex is central to the difference between the circadian clocks of Arabidopsis thaliana shoots and roots by Nimmo, Hugh G., Laird, Janet, Bindbeutel, Rebecca, Nusinow, Dmitri A.

“…The circadian clock regulates the timing of many aspects of plant physiology, and this requires entrainment of the clock to the prevailing day:night cycle…”
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Roots, cycles and leaves. Expression of the phosphoenolpyruvate carboxylase kinase gene family in soybean by Sullivan, S, Jenkins, G.I, Nimmo, H.G

“…Phosphorylation of phosphoenolpyruvate carboxylase (PEPc; EC 4.1.1.31) plays an important role in the control of central metabolism of higher plants. This…”
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Characterization and functional analysis of phosphoenolpyruvate carboxylase kinase genes in rice by Fukayama, Hiroshi, Tamai, Tesshu, Taniguchi, Yojiro, Sullivan, Stuart, Miyao, Mitsue, Nimmo, Hugh G.

“…Summary Phosphoenolpyruvate carboxylase (PEPC), a key enzyme of primary metabolism of higher plants, is regulated by reversible phosphorylation, which is…”
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Alternative Splicing Mediates Responses of the Arabidopsis Circadian Clock to Temperature Changes by James, Allan B, Syed, Naeem Hasan, Bordage, Simon, Marshall, Jacqueline, Nimmo, Gillian A, Jenkins, Gareth I, Herzyk, Pawel, Brown, John W.S, Nimmo, Hugh G

“…Alternative splicing plays crucial roles by influencing the diversity of the transcriptome and proteome and regulating protein structure/function and gene…”
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REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock by James, Allan B., Sharples, Chantal, Laird, Janet, Armstrong, Emily May, Guo, Wenbin, Tzioutziou, Nikoleta, Zhang, Runxuan, Brown, John W. S., Nimmo, Hugh G., Jones, Matthew A.

“…Summary Cold stress is one of the major environmental factors that limit growth and yield of plants. However, it is still not fully understood how plants…”
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