Search Results - "NARUM, Shawn R"

Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing by Campbell, Nathan R., Harmon, Stephanie A., Narum, Shawn R.

“…Genotyping‐in‐Thousands by sequencing (GT‐seq) is a method that uses next‐generation sequencing of multiplexed PCR products to generate genotypes from…”
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Comparison of FST outlier tests for SNP loci under selection by NARUM, SHAWN R, HESS, JON E

“…Genome scans with many genetic markers provide the opportunity to investigate local adaptation in natural populations and identify candidate genes under…”
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Mechanisms of thermal adaptation and evolutionary potential of conspecific populations to changing environments by Chen, Zhongqi, Farrell, Anthony P., Matala, Amanda, Narum, Shawn R.

“…Heterogeneous and ever‐changing thermal environments drive the evolution of populations and species, especially when extreme conditions increase selection…”
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Genotyping-by-sequencing in ecological and conservation genomics by Narum, Shawn R., Buerkle, C. Alex, Davey, John W., Miller, Michael R., Hohenlohe, Paul A.

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An evaluation of the potential factors affecting lifetime reproductive success in salmonids by Koch, Ilana J., Narum, Shawn R.

“…Lifetime reproductive success (LRS), the number of offspring produced over an organism's lifetime, is a fundamental component of Darwinian fitness. For taxa…”
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Utility of pooled sequencing for association mapping in nonmodel organisms by Micheletti, Steven J., Narum, Shawn R.

“…High‐density genome‐wide sequencing increases the likelihood of discovering genes of major effect and genomic structural variation in organisms. While there is…”
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Transcriptomic response to heat stress among ecologically divergent populations of redband trout by Narum, Shawn R, Campbell, Nathan R

“…As ectothermic organisms have evolved to differing aquatic climates, the molecular basis of thermal adaptation is a key area of research. In this study, we…”
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Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout by Hecht, Benjamin C., Campbell, Nathan R., Holecek, Dean E., Narum, Shawn R.

“…Little is known of the genetic basis of migration despite the ecological benefits migratory species provide to their communities and their rapid global decline…”
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Selection for upper thermal tolerance in rainbow trout (Oncorhynchus mykiss Walbaum) by Chen, Zhongqi, Snow, Michael, Lawrence, Craig S, Church, Anthony R, Narum, Shawn R, Devlin, Robert H, Farrell, Anthony P

“…Rainbow trout (Oncorhynchus mykiss Walbaum) in southern Western Australia have undergone passive selection for over 19 generations to survive high water…”
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Validation and association of candidate markers for adult migration timing and fitness in Chinook Salmon by Koch, Ilana J., Narum, Shawn R.

“…Recent studies have begun to elucidate the genetic basis for phenotypic traits in salmonid species, but many questions remain before these candidate genes can…”
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Thermal adaptation and acclimation of ectotherms from differing aquatic climates by Narum, Shawn R., Campbell, Nathan R., Meyer, Kevin A., Miller, Michael R., Hardy, Ronald W.

“…To elucidate the mechanisms of thermal adaptation and acclimation in ectothermic aquatic organisms from differing climates, we used a common‐garden experiment…”
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Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead by Micheletti, Steven J, Hess, Jon E, Zendt, Joseph S, Narum, Shawn R

“…Disparity in the timing of biological events occurs across a variety of systems, yet the understanding of genetic basis underlying diverse phenologies remains…”
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Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species by Hess, Jon E., Campbell, Nathan R., Close, David A., Docker, Margaret F., Narum, Shawn R.

“…Unlike most anadromous fishes that have evolved strict homing behaviour, Pacific lamprey (Entosphenus tridentatus) seem to lack philopatry as evidenced by…”
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Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application by Garner, Brittany A., Hand, Brian K., Amish, Stephen J., Bernatchez, Louis, Foster, Jeffrey T., Miller, Kristina M., Morin, Phillip A., Narum, Shawn R., O’Brien, Stephen J., Roffler, Gretchen, Templin, William D., Sunnucks, Paul, Strait, Jeffrey, Warheit, Kenneth I., Seamons, Todd R., Wenburg, John, Olsen, Jeffrey, Luikart, Gordon

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Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River by Narum, Shawn R., Horn, Rebekah, Willis, Stuart, Koch, Ilana, Hess, Jon

“…With the discovery of a major effect region (GREB1L, ROCK1) for adult migration timing in genomes of both Chinook Salmon and Steelhead, several subsequent…”
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Genomic islands of divergence infer a phenotypic landscape in Pacific lamprey by Hess, Jon E., Smith, Jeramiah J., Timoshevskaya, Nataliya, Baker, Cyndi, Caudill, Christopher C., Graves, David, Keefer, Matthew L., Kinziger, Andrew P., Moser, Mary L., Porter, Laurie L., Silver, Greg, Whitlock, Steven L., Narum, Shawn R.

“…High rates of dispersal can breakdown coadapted gene complexes. However, concentrated genomic architecture (i.e., genomic islands of divergence) can suppress…”
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Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies by Chen, Zhongqi, Grossfurthner, Lukas, Loxterman, Janet L., Masingale, Jonathan, Richardson, Bryce A., Seaborn, Travis, Smith, Brandy, Waits, Lisette P., Narum, Shawn R.

“…The rate of global climate change is projected to outpace the ability of many natural populations and species to adapt. Assisted migration (AM), which is…”
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Long‐term evaluation of fitness and demographic effects of a Chinook Salmon supplementation program by Janowitz‐Koch, Ilana, Rabe, Craig, Kinzer, Ryan, Nelson, Doug, Hess, Maureen A., Narum, Shawn R.

“…While the goal of supplementation programs is to provide positive, population‐level effects for species of conservation concern, these programs can also…”
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Advances in salmonid genetics—Insights from Coastwide and beyond by Narum, Shawn R., Campbell, Matthew, Coykendall, Katharine, Meek, Mariah, O'Malley, Kathleen G., Wellenreuther, Maren

“…This article summarizes the Special Issue of Evolutionary Applications focused on “Advances in Salmonid Genetics.” Contributions to this Special Issue were…”
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Genomic signatures among Oncorhynchus nerka ecotypes to inform conservation and management of endangered Sockeye Salmon by Nichols, Krista M., Kozfkay, Christine C., Narum, Shawn R.

“…Conservation of life history variation is an important consideration for many species with trade‐offs in migratory characteristics. Many salmonid species…”
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