Search Results - "NARSAI, REENA"

Cross-species transcriptomic analyses reveals common and opposite responses in Arabidopsis, rice and barley following oxidative stress and hormone treatment by Hartmann, Andreas, Berkowitz, Oliver, Whelan, James, Narsai, Reena

“…For translational genomics, a roadmap is needed to know the molecular similarities or differences between species, such as model species and crop species. This…”
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Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination by Narsai, Reena, Gouil, Quentin, Secco, David, Srivastava, Akanksha, Karpievitch, Yuliya V, Liew, Lim Chee, Lister, Ryan, Lewsey, Mathew G, Whelan, James

“…Seed germination involves progression from complete metabolic dormancy to a highly active, growing seedling. Many factors regulate germination and these…”
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What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and reoxygenation by SHINGAKI‐WELLS, RACHEL, MILLAR, A. HARVEY, WHELAN, JAMES, NARSAI, REENA

“…Floods can rapidly submerge plants, limiting oxygen to the extent that oxidative phosphorylation no longer generates adequate ATP supplies. Low‐oxygen tolerant…”
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Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets by Narsai, Reena, Ivanova, Aneta, Ng, Sophia, Whelan, James

“…Reference genes are widely used to normalise transcript abundance data determined by quantitative RT-PCR and microarrays. However, the approaches taken to…”
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Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia by Narsai, Reena, Rocha, Marcio, Geigenberger, Peter, Whelan, James, van Dongen, Joost T.

“…• The variation in tolerance to low oxygen is likely explained by divergent sets of molecular and metabolic responses between species. • We analysed the…”
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Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re‐oxygenation by Narsai, Reena, Secco, David, Schultz, Matthew D., Ecker, Joseph R., Lister, Ryan, Whelan, James

“…Summary Detailed molecular profiling of Oryza sativa (rice) was carried out to uncover the features that are essential for germination and early seedling…”
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Physiological and Transcriptome Analysis of Iron and Phosphorus Interaction in Rice Seedlings by Zheng, Luqing, Huang, Fangliang, Narsai, Reena, Wu, Jiaojiao, Giraud, Estelle, He, Fei, Cheng, Longjun, Wang, Fang, Wu, Ping, Whelan, James, Shou, Huixia

“…The antagonistic interaction between iron (Fe) and phosphorus (P) has been noted in the area of plant nutrition. To understand the physiology and molecular…”
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Multiple Lines of Evidence Localize Signaling, Morphology, and Lipid Biosynthesis Machinery to the Mitochondrial Outer Membrane of Arabidopsis by Duncan, Owen, Taylor, Nicolas L., Carrie, Chris, Eubel, Holger, Kubiszewski-Jakubiak, Szymon, Zhang, Botao, Millar, Reena Narsai A. Harvey, Whelan, James

“…The composition of the mitochondrial outer membrane is notoriously difficult to deduce by orthology to other organisms, and biochemical enrichments are…”
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Defining Core Metabolic and Transcriptomic Responses to Oxygen Availability in Rice Embryos and Young Seedlings by Narsai, Reena, Howell, Katharine A, Carroll, Adam, Ivanova, Aneta, Millar, A. Harvey, Whelan, James

“…Analysis reveals that there is limited overlap in the sets of transcripts that show significant changes in abundance during anaerobiosis in different plant…”
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Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process by Howell, Katharine A, Narsai, Reena, Carroll, Adam, Ivanova, Aneta, Lohse, Marc, Usadel, Björn, Millar, A. Harvey, Whelan, James

“…Transcriptome and metabolite profiling of rice (Oryza sativa) embryo tissue during a detailed time course formed a foundation for examining transcriptional and…”
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Mechanisms of growth and patterns of gene expression in oxygen‐deprived rice coleoptiles by Narsai, Reena, Edwards, Joshua M, Roberts, Thomas H, Whelan, James, Joss, Gregory H, Atwell, Brian J

“…Coleoptiles of rice (Oryza sativa) seedlings grown under water commonly elongate by up to 1 mm h⁻¹to reach the atmosphere. We initially analysed this highly…”
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Nucleotide and RNA Metabolism Prime Translational Initiation in the Earliest Events of Mitochondrial Biogenesis during Arabidopsis Germination by Law, Simon R., Narsai, Reena, Taylor, Nicolas L., Delannoy, Etienne, Carrie, Chris, Giraud, Estelle, Millar, A. Harvey, Small, Ian, Whelan, James

“…Mitochondria play a crucial role in germination and early seedling growth in Arabidopsis (Arabidopsis thaliana). Morphological observations of mitochondria…”
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Conserved and Opposite Transcriptome Patterns during Germination in Hordeum vulgare and Arabidopsis thaliana by Zhu, Yanqiao, Berkowitz, Oliver, Selinski, Jennifer, Hartmann, Andreas, Narsai, Reena, Wang, Yan, Mao, Peisheng, Whelan, James

“…Seed germination is a critical process for completion of the plant life cycle and for global food production. Comparing the germination transcriptomes of…”
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Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity by Huang, Shaobai, Taylor, Nicolas L, Narsai, Reena, Eubel, Holger, Whelan, James, Millar, A. Harvey

“…Mitochondria in rice (Oryza sativa) are vital in expanding our understanding of the cellular response to reoxygenation of tissues after anaerobiosis, the…”
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Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa by WANG, LU, YING, YINGHUI, NARSAI, REENA, YE, LINGXIAO, ZHENG, LUQING, TIAN, JINGLUAN, WHELAN, JAMES, SHOU, HUIXIA

“…Iron (Fe) is an essential micronutrient element for plant growth. Regulation of Fe‐deficiency signalling networks is one of the many functions reported for…”
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The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana by Kühn, Kristina, Carrie, Chris, Giraud, Estelle, Wang, Yan, Meyer, Etienne H., Narsai, Reena, des Francs‐Small, Catherine Colas, Zhang, Botao, Murcha, Monika W., Whelan, James

“…Summary We have identified a mitochondrial protein (RUG3) that is required for accumulation of mitochondrial respiratory chain complex I. RUG3 is related to…”
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MPIC: a mitochondrial protein import components database for plant and non-plant species by Murcha, Monika W, Narsai, Reena, Devenish, James, Kubiszewski-Jakubiak, Szymon, Whelan, James

“…In the 2 billion years since the endosymbiotic event that gave rise to mitochondria, variations in mitochondrial protein import have evolved across different…”
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Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana by Narsai, Reena, Castleden, Ian, Whelan, James

“…Arabidopsis thaliana is clearly established as the model plant species. Given the ever-growing demand for food, there is a need to translate the knowledge…”
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A Casparian strip domain-like gene, CASPL, negatively alters growth and cold tolerance by Yang, Jinghua, Ding, Changqing, Xu, Baochen, Chen, Cuiting, Narsai, Reena, Whelan, Jim, Hu, Zhongyuan, Zhang, Mingfang

“…A cold-induced transcript encoding a Casparian strip membrane domain (CASP)-like protein ( ClCASPL ) was identified in watermelon ( Citrullus lanatus) …”
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LETM Proteins Play a Role in the Accumulation of Mitochondrially Encoded Proteins in Arabidopsis thaliana and AtLETM2 Displays Parent of Origin Effects by Zhang, Botao, Carrie, Chris, Ivanova, Aneta, Narsai, Reena, Murcha, Monika W., Duncan, Owen, Wang, Yan, Law, Simon R., Albrecht, Verónica, Pogson, Barry, Giraud, Estelle, Van Aken, Olivier, Whelan, James

“…The Arabidopsis thaliana genome contains two genes with homology to the mitochondrial protein LETM1 (leucine zipper-EF-hand-containing transmembrane protein)…”
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