Search Results - "N. Krasnogor"
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A tutorial for competent memetic algorithms: model, taxonomy, and design issues
Published in IEEE transactions on evolutionary computation (01-10-2005)“…The combination of evolutionary algorithms with local search was named "memetic algorithms" (MAs) (Moscato, 1989). These methods are inspired by models of…”
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Measuring the similarity of protein structures by means of the universal similarity metric
Published in Bioinformatics (01-05-2004)“…Motivation: As an increasing number of protein structures become available, the need for algorithms that can quantify the similarity between protein structures…”
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An intelligent multi-restart memetic algorithm for box constrained global optimisation
Published in Evolutionary computation (01-03-2013)“…In this paper, we propose a multi-restart memetic algorithm framework for box constrained global continuous optimisation. In this framework, an evolutionary…”
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Self Generating Metaheuristics in Bioinformatics: The Proteins Structure Comparison Case
Published in Genetic programming and evolvable machines (01-06-2004)“…In this paper we describe the application of a so called 'Self-Generating' Memetic Algorithm to the Maximum Contact Map Overlap problem (MAX-CMO). The maximum…”
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Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates
Published in BioSystems (01-07-2012)“…In this paper we detail experimental methods to implement registers, logic gates and logic circuits using populations of photochromic molecules exposed to…”
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Special issue on Nature Inspired Cooperative Strategies for Optimisation (NICSO)
Published in Natural computing (01-03-2010)Get full text
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On improving genetic programming for symbolic regression
Published in 2005 IEEE Congress on Evolutionary Computation (2005)“…This paper reports an improvement to genetic programming (GP) search for the symbolic regression domain, based on an analysis of dissimilarity and mating. GP…”
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Conference Proceeding -
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EnrichNet: network-based gene set enrichment analysis
Published in Bioinformatics (15-09-2012)“…Assessing functional associations between an experimentally derived gene or protein set of interest and a database of known gene/protein sets is a common task…”
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Real-coded memetic algorithms with crossover hill-climbing
Published in Evolutionary computation (01-09-2004)“…This paper presents a real-coded memetic algorithm that applies a crossover hill-climbing to solutions produced by the genetic operators. On the one hand, the…”
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Automated tile design for self-assembly conformations
Published in 2005 IEEE Congress on Evolutionary Computation (2005)“…Self-assembly is a powerful autopoietic mechanism ubiquitous throughout the natural world. It may be found at the molecular scale and also at astronomical…”
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Adaptive cellular memetic algorithms
Published in Evolutionary computation (01-06-2009)“…A cellular genetic algorithm (CGA) is a decentralized form of GA where individuals in a population are usually arranged in a 2D grid and interactions among…”
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Quorum sensing P systems
Published in Theoretical computer science (22-02-2007)“…This paper continues the investigation of population P systems model [F. Bernardini, M. Gheorghe, Population P systems, Journal of Universal Computer Science…”
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Automated Self-Assembly Programming Paradigm: Initial Investigations
Published in Third IEEE International Workshop on Engineering of Autonomic & Autonomous Systems (EASE'06) (2006)“…This paper presents a model that simulates a self-assembly process for software components. Initial investigations on the automated self-assembly programming…”
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Special Issue on Memetic Algorithms
Published in IEEE transactions on systems, man and cybernetics. Part B, Cybernetics (01-02-2007)Get full text
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Uncertain Programming
Published in The Journal of the Operational Research Society (01-12-2006)Get full text
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A study on the design issues of Memetic Algorithm
Published in 2007 IEEE Congress on Evolutionary Computation (01-09-2007)“…Over the recent years, there has been increasing research activities made on improving the efficacy of memetic algorithm (MA) for solving complex optimization…”
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Conference Proceeding -
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Is increased diversity in genetic programming beneficial? An analysis of lineage selection
Published in The 2003 Congress on Evolutionary Computation, 2003. CEC '03 (2003)“…This paper presents an analysis of increased diversity in genetic programming. A selection strategy based on genetic lineages is used to increase genetic…”
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Conference Proceeding -
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On P systems with bounded parallelism
Published in Seventh International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (SYNASC'05) (2005)“…A framework that describes the evolution of P systems with bounded parallelism is defined by introducing basic formal features that can be then integrated into…”
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Conference Proceeding -
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A fuzzy sets based generalization of contact maps for the overlap of protein structures
Published in Fuzzy sets and systems (16-05-2005)“…The comparison of protein structures is an important problem in bioinformatics. As a protein biological role is derived from its three-dimensional native…”
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