Search Results - "NİKEREL, Emrah"

Distinct Short-Term Response of Intracellular Amino Acids in Saccharomyces cerevisiae and Pichia pastoris to Oxidative and Reductive Stress by Şirin Kaya, Burcu, Nikerel, Emrah

“…Despite being frequently encountered, the effect of oxidative or reductive stress on the intracellular metabolism and the response of the intracellular…”
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High level production of itaconic acid at low pH by Ustilago maydis with fed-batch fermentation by Demir, Hatice Taşpınar, Bezirci, Emine, Becker, Johanna, Tehrani, Hamed Hosseinpour, Nikerel, Emrah, Wierck, Nick, Türker, Mustafa

“…The metabolically engineered plant pathogen Ustilago maydis MB215 Δ cyp3 P etef ria1 has been cultivated to produce more than 80 g/L itaconate in 16 L scale pH…”
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Delactosed Whey Permeate as Substrate for Succinic Acid Fermentation by Actinobacillus succinogenes by Banger, Gizem, Kaya, Kerem, Omwene, Philip, Shakoory, Sheyda, Karagündüz, Ahmet, Keskinler, Bülent, Nikerel, Emrah

“…Delactosed whey permeate (DLP) is the remnant after the concentration of deproteinized whey permeate and separation of the lactose. As the milk industry…”
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Draft Genome Sequence of Magnesium-Dissolving Lactococcus garvieae A1, Isolated from Soil by Altın, Gonca, Nikerel, Emrah, Şahin, Fikrettin

“…The probiotic bacterium A1, isolated from soil, is interesting for biomining applications. Here, we report the draft genome sequence and annotation of this…”
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Comparative differences between T1a/b and T1e/m as substages in T1 urothelial carcinoma of the bladder by Turan, Turgay, Efiloğlu, Özgür, Günaydin, Bilal, Özkanli, Şeyma, Nikerel, Emrah, Atiş, Gökhan, Çaşkurlu, Turhan, Yildirim, Asif

“…ABSTRACT Objective To evaluate the prognostic value of the depth of lamina propria invasion in patients with T1 bladder cancer and to display comparative…”
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Prevalence and clinical/molecular characteristics of PTEN mutations in Turkish children with autism spectrum disorders and macrocephaly by Kaymakcalan, Hande, Kaya, İlyas, Cevher Binici, Nagihan, Nikerel, Emrah, Özbaran, Burcu, Görkem Aksoy, Mehmet, Erbilgin, Seda, Özyurt, Gonca, Jahan, Noor, Çelik, Didem, Yararbaş, Kanay, Yalçınkaya, Leyla, Köse, Sezen, Durak, Sibel, Ercan‐Sencicek, Adife Gulhan

“…Background Phosphatase and tensin homolog (PTEN) germline mutations are associated with cancer syndromes (PTEN hamartoma tumor syndrome; PHTS) and in pediatric…”
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Understanding regulation of metabolism through feasibility analysis by Nikerel, Emrah, Berkhout, Jan, Hu, Fengyuan, Teusink, Bas, Reinders, Marcel J T, de Ridder, Dick

“…Understanding cellular regulation of metabolism is a major challenge in systems biology. Thus far, the main assumption was that enzyme levels are key…”
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Integrating personalized genomics into Turkish healthcare system: A cancer-oriented pilot activity of Istanbul Northern Anatolian Public Hospitals with GLAB by Doganay, Levent, Ozdil, Kamil, Memisoglu, Kemal, Katrinli, Seyma, Karakoc, Emre, Nikerel, Emrah, Doganay, Gizem Dinler

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A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics by Nikerel, I Emrah, van Winden, Wouter A, van Gulik, Walter M, Heijnen, Joseph J

“…Dynamic modeling of metabolic reaction networks under in vivo conditions is a crucial step in order to obtain a better understanding of the (dis)functioning of…”
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Evaluation of metabolite extraction protocols and determination ofphysiological response to drought stress via reporter metabolites in model plant Brachypodium distachyon by TATLI, Özge, NİKEREL, Emrah, SOĞUTMAZ ÖZDEMİR, Bahar

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Black‐box kinetic modeling of growth and citric acid production and estimation of ATP maintenance parameters for Candida oleophila ATCC20177 by Tanıl, Ezgi, Nikerel, Emrah

“…Mathematical modeling represents and predicts biological systems, explains underlying mechanisms, constituting one of the key focus points for fundamental and…”
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Distinct Short-Term Response of Intracellular Amino Acids in ISaccharomyces cerevisiae/I and IPichia pastoris/I to Oxidative and Reductive Stress by Şirin Kaya, Burcu, Nikerel, Emrah

“…Despite being frequently encountered, the effect of oxidative or reductive stress on the intracellular metabolism and the response of the intracellular…”
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UV and chemically induced Halomonas smyrnensis mutants for enhanced levan productivity by Erkorkmaz, Burak Adnan, Kırtel, Onur, Abaramak, Gülbahar, Nikerel, Emrah, Toksoy Öner, Ebru

“…Halomonas smyrnensis AAD6T is a moderately halophilic bacterium proven to be a powerful biotechnological tool with its ability to accumulate valuable…”
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Association of 5′UTR polymorphism of secretory phospholipase A2 group IIA (PLA2G2A) gene with prostate cancer metastasis by Ozturk, Kaan, Onal, Meltem Selen, Efiloglu, Ozgur, Nikerel, Emrah, Yildirim, Asif, Telci, Dilek

“…•rs11573156 C>G (5′UTR) polymorphism was not associated with PCa incidence.•There was no association between PLA2G2A rs11573156 polymorphism and Gleason…”
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Dynamic co‐culture metabolic models reveal the fermentation dynamics, metabolic capacities and interplays of cheese starter cultures by Özcan, Emrah, Seven, Merve, Şirin, Burcu, Çakır, Tunahan, Nikerel, Emrah, Teusink, Bas, Toksoy Öner, Ebru

“…In this study, we have investigated the cheese starter culture as a microbial community through a question: can the metabolic behaviour of a co‐culture be…”
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Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics by Nikerel, I. Emrah, van Winden, Wouter A., Verheijen, Peter J.T., Heijnen, Joseph J.

“…In this work, we present a time-scale analysis based model reduction and parameter identifiability analysis method for metabolic reaction networks. The method…”
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A genome-scale metabolic network of the aroma bacterium Leuconostoc mesenteroides subsp. cremoris by Özcan, Emrah, Selvi, S. Selvin, Nikerel, Emrah, Teusink, Bas, Toksoy Öner, Ebru, Çakır, Tunahan

“…Leuconostoc mesenteroides subsp. cremoris is an obligate heterolactic fermentative lactic acid bacterium that is mostly used in industrial dairy fermentations…”
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Identification of reference genes in chordoma cells allows cross-comparison of expression studies across subtypes by Seven, Didem, Kizililsoley, Nehir, Nikerel, Emrah, Bayrak, Omer Faruk, Ture, Ugur

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A new hope for obesity management: Boron inhibits adipogenesis in progenitor cells through the Wnt/β-catenin pathway by Doğan, Ayşegül, Demirci, Selami, Apdik, Hüseyin, Bayrak, Ömer Faruk, Güllüoğlu, Şükrü, Tüysüz, Emrecan, Gusev, Oleg, Rizvanov, Albert A, Nikerel, Emrah, Şahin, Fikrettin

“…Abstract Obesity is a worldwide medical problem resulting in serious morbidity and mortality involving differentiation of pre-adipocytes into mature adipocytes…”
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Genome-Scale Metabolic Model of a Microbial Cell Factory ( Brevibacillus thermoruber 423) with Multi-Industry Potentials for Exopolysaccharide Production by Yaşar Yildiz, Songül, Nikerel, Emrah, Toksoy Öner, Ebru

“…423 is a thermophilic bacterium capable of producing high levels of exopolysaccharide (EPS) that has broad applications in nutrition, feed, cosmetics,…”
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