Search Results - "Myers, Chris"

Advancing reuse of genetic parts: progress and remaining challenges by Mante, Jeanet, Myers, Chris J.

“…Issues with data reuse have been recognized in synthetic biology and the broader scientific community. Policies and standards fall short as machine reasoning…”
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Engineering genetic circuits: advancements in genetic design automation tools and standards for synthetic biology by Buecherl, Lukas, Myers, Chris J

“…Synthetic biology (SynBio) is a field at the intersection of biology and engineering. Inspired by engineering principles, researchers use defined parts to…”
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Evaluating the Contribution of Model Complexity in Predicting Robustness in Synthetic Genetic Circuits by Buecherl, Lukas, Myers, Chris J., Fontanarrosa, Pedro

“…The design–build–test–learn workflow is pivotal in synthetic biology as it seeks to broaden access to diverse levels of expertise and enhance circuit…”
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Genetic circuit design automation with Cello 2.0 by Jones, Timothy S., Oliveira, Samuel M. D., Myers, Chris J., Voigt, Christopher A., Densmore, Douglas

“…Cells interact with their environment, communicate among themselves, track time and make decisions through functions controlled by natural regulatory genetic…”
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Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing by Whitehead, Timothy A, Chevalier, Aaron, Song, Yifan, Dreyfus, Cyrille, Fleishman, Sarel J, De Mattos, Cecilia, Myers, Chris A, Kamisetty, Hetunandan, Blair, Patrick, Wilson, Ian A, Baker, David

“…To increase the affinity of designed protein inhibitors for influenza hemagglutinin, Whitehead et al . use yeast display and deep sequencing to measure the…”
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PhageBox: An Open Source Digital Microfluidic Extension With Applications for Phage Discovery by Albin, Dreycey, Buecherl, Lukas, Kochavi, Eitan, Niehaus, Elise, Novack, Sasha, Uragoda, Shenali, Myers, Chris J., Alistar, Mirela

“…Objective: Recent advancements demonstrate the significant role of digital microfluidics in automating laboratory work with DNA and on-site viral testing…”
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Sequence-Based Searching for SynBioHub Using VSEARCH by Yu, Eric, Mante, Jeanet, Myers, Chris J

“…The ability to search for a part by its sequence is crucial for a large repository of parts. Prior to this work, however, this was not possible on SynBioHub…”
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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2 by Hucka, Michael, Bergmann, Frank T, Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M, König, Matthias, Novère, Nicolas Le, Myers, Chris J, Olivier, Brett G, Sahle, Sven, Schaff, James C, Sheriff, Rahuman, Smith, Lucian P, Waltemath, Dagmar, Wilkinson, Darren J, Zhang, Fengkai

“…Computational models can help researchers to interpret data, understand biological functions, and make quantitative predictions. The Systems Biology Markup…”
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SBOL Visual: A Graphical Language for Genetic Designs by Quinn, Jacqueline Y, Cox, 3rd, Robert Sidney, Adler, Aaron, Beal, Jacob, Bhatia, Swapnil, Cai, Yizhi, Chen, Joanna, Clancy, Kevin, Galdzicki, Michal, Hillson, Nathan J, Le Novère, Nicolas, Maheshwari, Akshay J, McLaughlin, James Alastair, Myers, Chris J, P, Umesh, Pocock, Matthew, Rodriguez, Cesar, Soldatova, Larisa, Stan, Guy-Bart V, Swainston, Neil, Wipat, Anil, Sauro, Herbert M

“…Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic engineering. It consists of symbols representing DNA subsequences, including…”
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SBOLCanvas: A Visual Editor for Genetic Designs by Terry, Logan, Earl, Jared, Thayer, Sam, Bridge, Samuel, Myers, Chris J

“…SBOLCanvas is a web-based application that can create and edit genetic constructs using the SBOL data and visual standards. SBOLCanvas allows a user to create…”
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SeqImprove: Machine-Learning-Assisted Curation of Genetic Circuit Sequence Information by Mante, Jeanet, Sents, Zach, Britt, Duncan, Mo, William, Liao, Chunxiao, Greer, Ryan, Myers, Chris J.

“…The progress and utility of synthetic biology is currently hindered by the lengthy process of studying literature and replicating poorly documented work…”
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SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology by McLaughlin, James Alastair, Myers, Chris J, Zundel, Zach, Mısırlı, Göksel, Zhang, Michael, Ofiteru, Irina Dana, Goñi-Moreno, Angel, Wipat, Anil

“…The SynBioHub repository (https://synbiohub.org) is an open-source software project that facilitates the sharing of information about engineered biological…”
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Complex Thermodynamic Behavior of Single-Stranded Nucleic Acid Adsorption to Graphene Surfaces by Ranganathan, Srivathsan V, Halvorsen, Ken, Myers, Chris A, Robertson, Neil M, Yigit, Mehmet V, Chen, Alan A

“…In just over a decade since its discovery, research on graphene has exploded due to a number of potential applications in electronics, materials, and medicine…”
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Design of Asynchronous Genetic Circuits by Nguyen, Tramy, Jones, Timothy S., Fontanarrosa, Pedro, Mante, Jeanet V., Zundel, Zach, Densmore, Douglas, Myers, Chris

“…Most digital electronic circuits utilize a timing reference to synchronize the progression of signals and enable sequential memory elements. These designs may…”
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Investigating and Modeling the Factors That Affect Genetic Circuit Performance by Zilberzwige-Tal, Shai, Fontanarrosa, Pedro, Bychenko, Darya, Dorfan, Yuval, Gazit, Ehud, Myers, Chris J.

“…Over the past 2 decades, synthetic biology has yielded ever more complex genetic circuits that are able to perform sophisticated functions in response to…”
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Synthetic Biology Curation Tools (SYNBICT) by Roehner, Nicholas, Mante, Jeanet, Myers, Chris J, Beal, Jacob

“…Much progress has been made in developing tools to generate component-based design representations of biological systems from standard libraries of parts. Most…”
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SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design by Zhang, Michael, McLaughlin, James Alastair, Wipat, Anil, Myers, Chris J

“…As the Synthetic Biology Open Language (SBOL) data and visual standards gain acceptance for describing genetic designs in a detailed and reproducible way,…”
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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core by Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

“…Computational models can help researchers to interpret data, understand biological functions, and make quantitative predictions. The Systems Biology Markup…”
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A Comparison of Weighted Stochastic Simulation Methods for the Analysis of Genetic Circuits by Ahmadi, Mohammad, Thomas, Payton J., Buecherl, Lukas, Winstead, Chris, Myers, Chris J., Zheng, Hao

“…Rare events are of particular interest in synthetic biology because rare biochemical events may be catastrophic to a biological system by, for example,…”
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SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories by Zhang, Michael, Zundel, Zach, Myers, Chris J

“…This paper describes SBOLExplorer, a system that is used to provide intuitive searching within the SynBioHub genetic design repository. SynBioHub stores…”
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