Search Results - "Musser, Steven"

Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database by Allard, Marc W, Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M, Brown, Eric W, Timme, Ruth

“…The FDA has created a United States-based open-source whole-genome sequencing network of state, federal, international, and commercial partners. The…”
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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water by Maguire, Meghan, Kase, Julie A, Roberson, Dwayne, Muruvanda, Tim, Brown, Eric W, Allard, Marc, Musser, Steven M, González-Escalona, Narjol

“…Shiga toxin-producing Escherichia coli (STEC) contamination of agricultural water might be an important factor to recent foodborne illness and outbreaks…”
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On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004 by Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Timme, Ruth, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W

“…Facile laboratory tools are needed to augment identification in contamination events to trace the contamination back to the source (traceback) of Salmonella…”
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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach by Allard, Marc W, Luo, Yan, Strain, Errol, Li, Cong, Keys, Christine E, Son, Insook, Stones, Robert, Musser, Steven M, Brown, Eric W

“…Next-Generation Sequencing (NGS) is increasingly being used as a molecular epidemiologic tool for discerning ancestry and traceback of the most complicated,…”
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Genomic perspectives on foodborne illness by Lipman, David J., Cherry, Joshua L., Strain, Errol, Agarwala, Richa, Musser, Steven M.

“…Whole-genome sequencing of bacterial pathogens is used by public health agencies to link cases of food poisoning caused by the same source of contamination…”
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Development of a targeted amplicon sequencing method for genotyping Cyclospora cayetanensis from fresh produce and clinical samples with enhanced genomic resolution and sensitivity by Leonard, Susan R, Mammel, Mark K, Gharizadeh, Baback, Almeria, Sonia, Ma, Zhihai, Lipman, David J, Torrence, Mary E, Wang, Chunlin, Musser, Steven M

“…Outbreaks of cyclosporiasis, an enteric illness caused by the parasite , have been associated with consumption of various types of fresh produce. Although a…”
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Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato) by Ottesen, Andrea R, González Peña, Antonio, White, James R, Pettengill, James B, Li, Cong, Allard, Sarah, Rideout, Steven, Allard, Marc, Hill, Thomas, Evans, Peter, Strain, Errol, Musser, Steven, Knight, Rob, Brown, Eric

“…Research to understand and control microbiological risks associated with the consumption of fresh fruits and vegetables has examined many environments in the…”
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Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States by Stevens, Eric L, Carleton, Heather A, Beal, Jennifer, Tillman, Glenn E, Lindsey, Rebecca L, Lauer, A C, Pightling, Arthur, Jarvis, Karen G, Ottesen, Andrea, Ramachandran, Padmini, Hintz, Leslie, Katz, Lee S, Folster, Jason P, Whichard, Jean M, Trees, Eija, Timme, Ruth E, McDERMOTT, Patrick, Wolpert, Beverly, Bazaco, Michael, Zhao, Shaohua, Lindley, Sabina, Bruce, Beau B, Griffin, Patricia M, Brown, Eric, Allard, Marc, Tallent, Sandra, Irvin, Kari, Hoffmann, Maria, Wise, Matt, Tauxe, Robert, Gerner-Smidt, Peter, Simmons, Mustafa, Kissler, Bonnie, Defibaugh-Chavez, Stephanie, Klimke, William, Agarwala, Richa, Lindsay, James, Cook, Kimberly, Austerman, Suelee Robbe, Goldman, David, McGARRY, Sherri, Hale, Kis Robertson, Dessai, Uday, Musser, Steven M, Braden, Chris

“…This multiagency report developed by the Interagency Collaboration for Genomics for Food and Feed Safety provides an overview of the use of and transition to…”
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Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water by Maguire, Meghan, Ramachandran, Padmini, Tallent, Sandra, Mammel, Mark K., Brown, Eric W., Allard, Marc W., Musser, Steven M., González-Escalona, Narjol

“…Culture-independent metagenomic sequencing of enriched agricultural water could expedite the detection and virulotyping of Shiga toxin-producing Escherichia…”
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Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing by Lienau, E. Kurt, Cao, Guojie, Stones, Robert, Strain, Errol, Meng, Jianghong, Wang, Charles, Zheng, Jie, Ottesen, Andrea R, Keys, Christine E, Hammack, Thomas S, Musser, Steven M, Brown, Eric W, Allard, Marc W

“…The complexity of the modern food supply makes identifying foodborne outbreaks difficult. In this report, FDA investigators identify a 44-state outbreak of…”
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Survey of Foodborne Pathogens, Aerobic Plate Counts, Total Coliform Counts, and Escherichia coli Counts in Leafy Greens, Sprouts, and Melons Marketed in the United States by Zhang, Guodong, Chen, Yi, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W, Strain, Errol, Allard, Marc, Bunning, Vincent K, Parish, Mickey, Musser, Steven M, Hammack, Thomas S

“…The objective of this research was to assess the microbiological status of leafy greens, sprouts, and melons from U.S. markets. A total of 14,183 samples of…”
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Platform for Identification of Salmonella Serovar Differentiating Bacterial Proteins by Top-Down Mass Spectrometry: S. Typhimurium vs S. Heidelberg by McFarland, Melinda A, Andrzejewski, Denis, Musser, Steven M, Callahan, John H

“…Intact protein expression profiling has proven to be a powerful tool for bacterial subspecies differentiation. To facilitate typing, epidemiology, and…”
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Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing by Allard, Marc W., Strain, Errol, Rand, Hugh, Melka, David, Correll, William A., Hintz, Leslie, Stevens, Eric, Timme, Ruth, Lomonaco, Sara, Chen, Yi, Musser, Steven M., Brown, Eric W.

“…We review how FDA surveillance identifies several ways that whole genome sequencing (WGS) improves actionable outcomes for public health and compliance in a…”
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Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters by Timme, Ruth E, Pettengill, James B, Allard, Marc W, Strain, Errol, Barrangou, Rodolphe, Wehnes, Chris, Van Kessel, Joann S, Karns, Jeffrey S, Musser, Steven M, Brown, Eric W

“…The enteric pathogen Salmonella enterica is one of the leading causes of foodborne illness in the world. The species is extremely diverse, containing more than…”
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Survey of Salmonella in raw tree nuts at retail in the United States by Zhang, Guodong, Hu, Lijun, Luo, Yan, Santillana Farakos, Sofia M, Johnson, Rhoma, Scott, Virginia N., Curry, Phillip, Melka, David, Brown, Eric W., Strain, Errol, Bunning, Vincent K., Musser, Steven M., Hammack, Thomas S.

“…The objective of this survey was to estimate the prevalence, contamination level, and genetic diversity of Salmonella in selected raw, shelled tree nuts…”
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Prevalence of Salmonella in Cashews, Hazelnuts, Macadamia Nuts, Pecans, Pine Nuts, and Walnuts in the United States by Zhang, Guodong, Hu, Lijun, Melka, David, Wang, Hua, Laasri, Anna, Brown, Eric W, Strain, Errol, Allard, Marc, Bunning, Vincent K, Musser, Steven M, Johnson, Rhoma, Santillana Farakos, Sofia, Scott, Virginia N, Pouillot, Régis, Doren, Jane M Van, Hammack, Thomas S

“…Nuts have been identified as a vector for salmonellosis. The objective of this project was to estimate the prevalence and contamination level of Salmonella in…”
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The Chromatographic Role in High Resolution Mass Spectrometry for Non-Targeted Analysis by Croley, Timothy R., White, Kevin D., Callahan, John H., Musser, Steven M.

“…Resolution improvements in time-of-flight instrumentation and the emergence of the Orbitrap mass spectrometer have researchers using high resolution mass…”
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The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes by Stevens, Eric L, Timme, Ruth, Brown, Eric W, Allard, Marc W, Strain, Errol, Bunning, Kelly, Musser, Steven

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Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks by Wilson, Mark R, Brown, Eric, Keys, Chris, Strain, Errol, Luo, Yan, Muruvanda, Tim, Grim, Christopher, Jean-Gilles Beaubrun, Junia, Jarvis, Karen, Ewing, Laura, Gopinath, Gopal, Hanes, Darcy, Allard, Marc W, Musser, Steven

“…Establishing an association between possible food sources and clinical isolates requires discriminating the suspected pathogen from an environmental…”
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Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere by Ottesen, Andrea R, Gonzalez, Antonio, Bell, Rebecca, Arce, Caroline, Rideout, Steven, Allard, Marc, Evans, Peter, Strain, Errol, Musser, Steven, Knight, Rob, Brown, Eric, Pettengill, James B

“…The ability to detect a specific organism from a complex environment is vitally important to many fields of public health, including food safety. For example,…”
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