Search Results - "Munch, Kasper"

Graph-based algorithms for phase-type distributions by Røikjer, Tobias, Hobolth, Asger, Munch, Kasper

“…Phase-type distributions model the time until absorption in continuous or discrete-time Markov chains on a finite state space. The multivariate phase-type…”
Get full text

A comprehensive genomic history of extinct and living elephants by Palkopoulou, Eleftheria, Lipson, Mark, Mallick, Swapan, Nielsen, Svend, Rohland, Nadin, Baleka, Sina, Karpinski, Emil, Ivancevic, Atma M., To, Thu-Hien, Kortschak, R. Daniel, Raison, Joy M., Qu, Zhipeng, Chin, Tat-Jun, Alt, Kurt W., Claesson, Stefan, Dalén, Love, MacPhee, Ross D. E., Meller, Harald, Roca, Alfred L., Ryder, Oliver A., Heiman, David, Young, Sarah, Breen, Matthew, Williams, Christina, Aken, Bronwen L., Ruffier, Magali, Karlsson, Elinor, Johnson, Jeremy, Di Palma, Federica, Alfoldi, Jessica, Adelson, David L., Mailund, Thomas, Munch, Kasper, Lindblad-Toh, Kerstin, Hofreiter, Michael, Poinar, Hendrik, Reich, David

“…Elephantids are the world’s most iconic megafaunal family, yet there is no comprehensive genomic assessment of their relationships. We report a total of 14…”
Get full text

Lineage Sorting in Apes by Mailund, Thomas, Munch, Kasper, Schierup, Mikkel Heide

“…Recombination allows different parts of the genome to have different genealogical histories. When a species splits in two, allelic lineages sort into the two…”
Get full text

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics by Munch, Kasper, Boomsma, Wouter, Huelsenbeck, John P., Willerslev, Eske, Nielsen, Rasmus

“…We provide a new automated statistical method for DNA barcoding based on a Bayesian phylogenetic analysis. The method is based on automated database sequence…”
Get full text

Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca by Fan, Ruiwen, Gu, Zhongru, Guang, Xuanmin, Marín, Juan Carlos, Varas, Valeria, González, Benito A, Wheeler, Jane C, Hu, Yafei, Li, Erli, Sun, Xiaohui, Yang, Xukui, Zhang, Chi, Gao, Wenjun, He, Junping, Munch, Kasper, Corbett-Detig, Russel, Barbato, Mario, Pan, Shengkai, Zhan, Xiangjiang, Bruford, Michael W, Dong, Changsheng

“…Despite their regional economic importance and being increasingly reared globally, the origins and evolution of the llama and alpaca remain poorly understood…”
Get full text

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence by Dutheil, Julien Y, Munch, Kasper, Nam, Kiwoong, Mailund, Thomas, Schierup, Mikkel H

“…The human and chimpanzee X chromosomes are less divergent than expected based on autosomal divergence. We study incomplete lineage sorting patterns between…”
Get full text

Fast phylogenetic DNA barcoding by Munch, Kasper, Boomsma, Wouter, Willerslev, Eske, Nielsen, Rasmus

“…We present a heuristic approach to the DNA assignment problem based on phylogenetic inferences using constrained neighbour joining and non-parametric…”
Get full text

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species by Mailund, Thomas, Halager, Anders E, Westergaard, Michael, Dutheil, Julien Y, Munch, Kasper, Andersen, Lars N, Lunter, Gerton, Prüfer, Kay, Scally, Aylwyn, Hobolth, Asger, Schierup, Mikkel H

“…We present a hidden Markov model (HMM) for inferring gradual isolation between two populations during speciation, modelled as a time interval with restricted…”
Get full text

Ancient DNA reveals late survival of mammoth and horse in interior Alaska by Haile, James, Froese, Duane G, MacPhee, Ross D.E, Roberts, Richard G, Arnold, Lee J, Reyes, Alberto V, Rasmussen, Morten, Nielsen, Rasmus, Brook, Barry W, Robinson, Simon, Demuro, Martina, Gilbert, M. Thomas P, Munch, Kasper, Austin, Jeremy J, Cooper, Alan, Barnes, Ian, Möller, Per, Willerslev, Eske

“…Causes of late Quaternary extinctions of large mammals ("megafauna") continue to be debated, especially for continental losses, because spatial and temporal…”
Get full text

Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. rostrata) by Jacobsen, Magnus W, Pujolar, Jose Martin, Bernatchez, Louis, Munch, Kasper, Jian, Jianbo, Niu, Yongchao, Hansen, Michael M

“…The importance of speciation‐with‐geneflow scenarios is increasingly appreciated. However, the specific processes and the resulting genomic footprints of…”
Get full text

Ancient bacteria show evidence of DNA repair by Johnson, Sarah Stewart, Hebsgaard, Martin B, Christensen, Torben R, Mastepanov, Mikhail, Nielsen, Rasmus, Munch, Kasper, Brand, Tina, Gilbert, M. Thomas P, Zuber, Maria T, Bunce, Michael, Rønn, Regin, Gilichinsky, David, Froese, Duane, Willerslev, Eske

“…Recent claims of cultivable ancient bacteria within sealed environments highlight our limited understanding of the mechanisms behind long-term cell survival…”
Get full text

Ancient DNA Chronology within Sediment Deposits: Are Paleobiological Reconstructions Possible and Is DNA Leaching a Factor? by Haile, James, Holdaway, Richard, Oliver, Karen, Bunce, Michael, Gilbert, M. Thomas P., Nielsen, Rasmus, Munch, Kasper, Ho, Simon Y. W., Shapiro, Beth, Willerslev, Eske

“…In recent years, several studies have reported the successful extraction of ancient DNA (aDNA) from both frozen and nonfrozen sediments (even in the absence of…”
Get full text

Extensive X-linked adaptive evolution in central chimpanzees by Hvilsom, Christina, Qian, Yu, Bataillon, Thomas, Li, Yingrui, Mailund, Thomas, Sallé, Bettina, Carlsen, Frands, Li, Ruiqiang, Zheng, Hancheng, Jiang, Tao, Jiang, Hui, Jin, Xin, Munch, Kasper, Hobolth, Asger, Siegismund, Hans R, Wang, Jun, Schierup, Mikkel Heide

“…Surveying genome-wide coding variation within and among species gives unprecedented power to study the genetics of adaptation, in particular the proportion of…”
Get full text

Non-Destructive Sampling of Ancient Insect DNA by Thomsen, Philip Francis, Elias, Scott, Gilbert, M. Thomas P, Haile, James, Munch, Kasper, Kuzmina, Svetlana, Froese, Duane G, Sher, Andrei, Holdaway, Richard N, Willerslev, Eske

“…Background: A major challenge for ancient DNA (aDNA) studies on insect remains is that sampling procedures involve at least partial destruction of the…”
Get full text

Automatic generation of gene finders for eukaryotic species by Munch, Kasper, Krogh, Anders

“…The number of sequenced eukaryotic genomes is rapidly increasing. This means that over time it will be hard to keep supplying customised gene finders for each…”
Get full text

A hidden Markov model approach for determining expression from genomic tiling micro arrays by Munch, Kasper, Gardner, Paul P, Arctander, Peter, Krogh, Anders

“…Genomic tiling micro arrays have great potential for identifying previously undiscovered coding as well as non-coding transcription. To-date, however, analyses…”
Get full text

Population Genomics in the Great Apes by Castellano, David, Munch, Kasper

“…The great apes play an important role as model organisms. They are our closest living relatives, allowing us to identify the genetic basis of phenotypic traits…”
Get more information

Versatile Detection of Diverse Selective Sweeps with Flex-Sweep by Lauterbur, M Elise, Munch, Kasper, Enard, David

“…Understanding the impacts of selection pressures influencing modern-day genomic diversity is a major goal of evolutionary genomics. In particular, the…”
Get full text

Pediatric reference intervals of the hemoglobin fractions HbA2, HbF and HbA0 using high-performance liquid chromatography and capillary electrophoresis by Lauridsen, Kasper Munch, Kristiansen, Helle Pilgaard, Winther-Larsen, Anne

“…•Hemoglobin fractions were measured by HPLC and CE in individuals aged 1–18 years.•95 % reference intervals were established for HbA2, HbF and HbA0 for both…”
Get full text

Impact of Mutation Rate and Selection at Linked Sites on DNA Variation across the Genomes of Humans and Other Homininae by Castellano, David, Eyre-Walker, Adam, Munch, Kasper

“…Abstract DNA diversity varies across the genome of many species. Variation in diversity across a genome might arise from regional variation in the mutation…”
Get full text