Search Results - "Mulder, Arnout"

Characterization of Mycobacterium orygis as M. tuberculosis complex subspecies by van Ingen, Jakko, Rahim, Zeaur, Mulder, Arnout, Boeree, Martin J, Simeone, Roxane, Brosch, Roland, van Soolingen, Dick

“…The oryx bacilli are Mycobacterium tuberculosis complex organisms for which phylogenetic position and host range are unsettled. We characterized 22 isolates by…”
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Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study by Jajou, Rana, de Neeling, Albert, van Hunen, Rianne, de Vries, Gerard, Schimmel, Henrieke, Mulder, Arnout, Anthony, Richard, van der Hoek, Wim, van Soolingen, Dick

“…Patients with Mycobacterium tuberculosis isolates sharing identical DNA fingerprint patterns can be epidemiologically linked. However, municipal health…”
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Validation of pncA Gene Sequencing in Combination with the Mycobacterial Growth Indicator Tube Method To Test Susceptibility of Mycobacterium tuberculosis to Pyrazinamide by SIMONS, Sami O, VAN INGEN, Jakko, VAN DER LAAN, Tridia, MULDER, Arnout, RICHARD DEKHUIJZEN, P. N, BOEREE, Martin J, VAN SOOLINGEN, Dick

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Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5-Year Nationwide Survey by de Beer, Jessica L, van Ingen, Jakko, de Vries, Gerard, Erkens, Connie, Sebek, Maruschka, Mulder, Arnout, Sloot, Rosa, van den Brandt, Anne-Marie, Enaimi, Mimount, Kremer, Kristin, Supply, Philip, van Soolingen, Dick

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Correction: Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study by Jajou, Rana, de Neeling, Albert, van Hunen, Rianne, de Vries, Gerard, Schimmel, Henrieke, Mulder, Arnout, Anthony, Richard, van der Hoek, Wim, van Soolingen, Dick

“…[This corrects the article DOI: 10.1371/journal.pone.0195413.]…”
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Current trends of Mycobacterium tuberculosis molecular epidemiology in Saudi Arabia and associated demographical factors by Al-Hajoj, Sahal, Varghese, Bright, Al-Habobe, Farah, Shoukri, Mohammed M., Mulder, Arnout, van Soolingen, Dick

“…•Phylogenetic diversity of M. tuberculosis is huge in Saudi Arabia.•The strain lineage distributions among young aged patients are different from the elderly…”
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Whole genome sequencing as the ultimate tool to diagnose tuberculosis by van Soolingen, Dick, Jajou, Rana, Mulder, Arnout, de Neeling, Han

“…Abstract In the past two decades, DNA techniques have been increasingly used in the laboratory diagnosis of tuberculosis (TB). The (sub) species of the…”
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Mycobacterium tuberculosis complex sample processing by mechanical lysis, an essential step for reliable whole genome sequencing by Hermans, Noud, de Zwaan, Rina, Mulder, Arnout, van den Dool, Joyce, van Soolingen, Dick, Kremer, Kristin, Anthony, Richard

“…Mycobacterium tuberculosis complex (MTBC) whole genome sequencing (WGS) turnaround time and WGS success rates are highly influenced by DNA extraction protocols…”
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WGS more accurately predicts susceptibility of Mycobacterium tuberculosis to first-line drugs than phenotypic testing by Jajou, Rana, van der Laan, Tridia, de Zwaan, Rina, Kamst, Miranda, Mulder, Arnout, de Neeling, Albert, Anthony, Richard, van Soolingen, Dick

“…Abstract Background Drug-susceptibility testing (DST) of Mycobacterium tuberculosis complex (MTBC) isolates by the Mycobacteria Growth Indicator Tube (MGIT)…”
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Tracking Mycobacterium tuberculosis sequencing samples using unique spikes of random DNA by de Neeling, Albert J., Jonckers Nieboer, Lucia F., Mulder, Arnout, Mariman, Rob, Anthony, Richard M., van Soolingen, Dick

“…In the Netherlands, local laboratories are involved in the primary diagnosis of tuberculosis. Positive Mycobacterium tuberculosis complex cultures are sent to…”
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Role of rpsA gene sequencing in diagnosis of pyrazinamide resistance by Simons, Sami O, Mulder, Arnout, van Ingen, Jakko, Boeree, Martin J, van Soolingen, Dick

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Prevalence and Characterization of Heterogeneous Variable-Number Tandem-Repeat Clusters Comprising Drug-Susceptible and/or Variable Resistant Mycobacterium tuberculosis Complex Isolates in the Netherlands from 2004 to 2016 by Roof, Inge, Jajou, Rana, Kamst, Miranda, Mulder, Arnout, de Neeling, Albert, van Hunen, Rianne, van der Hoek, Wim, van Soolingen, Dick

“…The variable-number tandem-repeat (VNTR) typing method is used to study tuberculosis (TB) transmission. Clustering of isolates with identical VNTR patterns is…”
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A Predominant Variable-Number Tandem-Repeat Cluster of Mycobacterium tuberculosis Isolates among Asylum Seekers in the Netherlands and Denmark, Deciphered by Whole-Genome Sequencing by Jajou, Rana, de Neeling, Albert, Rasmussen, Erik Michael, Norman, Anders, Mulder, Arnout, van Hunen, Rianne, de Vries, Gerard, Haddad, Walid, Anthony, Richard, Lillebaek, Troels, van der Hoek, Wim, van Soolingen, Dick

“…In many countries, isolates are routinely subjected to variable-number tandem-repeat (VNTR) typing to investigate transmission. Unexpectedly, cross-border…”
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Occurrence and Nature of Double Alleles in Variable-Number Tandem-Repeat Patterns of More than 8,000 Mycobacterium tuberculosis Complex Isolates in The Netherlands by Jajou, Rana, Kamst, Miranda, van Hunen, Rianne, de Zwaan, Carolina Catherina, Mulder, Arnout, Supply, Philip, Anthony, Richard, van der Hoek, Wim, van Soolingen, Dick

“…Since 2004, variable-number tandem-repeat (VNTR) typing of complex isolates has been applied on a structural basis in The Netherlands to study the epidemiology…”
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Mechanisms of Phenotypic Rifampicin Tolerance in Mycobacterium tuberculosis Beijing Genotype Strain B0/W148 Revealed by Proteomics by de Keijzer, Jeroen, Mulder, Arnout, de Beer, Jessica, de Ru, Arnoud H, van Veelen, Peter A, van Soolingen, Dick

“…The “successful” Russian clone B0/W148 of Mycobacterium tuberculosis Beijing is well-known for its capacity to develop antibiotic resistance. During treatment,…”
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Thioridazine Alters the Cell-Envelope Permeability of Mycobacterium tuberculosis by de Keijzer, Jeroen, Mulder, Arnout, de Haas, Petra E. W, de Ru, Arnoud H, Heerkens, Evy M, Amaral, Leonard, van Soolingen, Dick, van Veelen, Peter A

“…The increasing occurrence of multidrug resistant tuberculosis exerts a major burden on treatment of this infectious disease. Thioridazine, previously used as a…”
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Parallel reaction monitoring of clinical Mycobacterium tuberculosis lineages reveals pre-existent markers of rifampicin tolerance in the emerging Beijing lineage by de Keijzer, Jeroen, Mulder, Arnout, de Ru, Arnoud H., van Soolingen, Dick, van Veelen, Peter A.

“…The spread of multidrug resistant Mycobacterium tuberculosis is one of the major challenges in tuberculosis control. In Eurasia, the spread of multidrug…”
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Optimization of standard in-house 24-locus variable-number tandem-repeat typing for Mycobacterium tuberculosis and its direct application to clinical material by de Beer, Jessica L, Akkerman, Onno W, Schürch, Anita C, Mulder, Arnout, van der Werf, Tjip S, van der Zanden, Adri G M, van Ingen, Jakko, van Soolingen, Dick

“…Variable-number tandem-repeat (VNTR) typing with a panel of 24 loci is the current gold standard in the molecular typing of Mycobacterium tuberculosis complex…”
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Comparative Study of IS 6110 Restriction Fragment Length Polymorphism and Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5-Year Nationwide Survey by de Beer, Jessica L., van Ingen, Jakko, de Vries, Gerard, Erkens, Connie, Sebek, Maruschka, Mulder, Arnout, Sloot, Rosa, van den Brandt, Anne-Marie, Enaimi, Mimount, Kremer, Kristin, Supply, Philip, van Soolingen, Dick

“…ABSTRACT In order to switch from IS 6110 and polymorphic GC-rich repetitive sequence (PGRS) restriction fragment length polymorphism (RFLP) to 24-locus…”
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Disseminated Mycobacterium avium subsp. avium infection in a cat, the Netherlands by de Groot, Piet Hein S., van Ingen, Jakko, de Zwaan, Rina, Mulder, Arnout, Boeree, Martin J., van Soolingen, Dick

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