Search Results - "Molecular plant"

TBtools-II: A "one for all, all for one" bioinformatics platform for biological big-data mining by Chen, Chengjie, Wu, Ya, Li, Jiawei, Wang, Xiao, Zeng, Zaohai, Xu, Jing, Liu, Yuanlong, Feng, Junting, Chen, Hao, He, Yehua, Xia, Rui

“…Since the official release of the stand-alone bioinformatics toolkit TBtools in 2020, its superior functionality in data analysis has been demonstrated by its…”
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TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data by Chen, Chengjie, Chen, Hao, Zhang, Yi, Thomas, Hannah R., Frank, Margaret H., He, Yehua, Xia, Rui

“…The rapid development of high-throughput sequencing techniques has led biology into the big-data era. Data analyses using various bioinformatics tools rely on…”
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Crop Phenomics and High-Throughput Phenotyping: Past Decades, Current Challenges, and Future Perspectives by Yang, Wanneng, Feng, Hui, Zhang, Xuehai, Zhang, Jian, Doonan, John H., Batchelor, William David, Xiong, Lizhong, Yan, Jianbing

“…Since whole-genome sequencing of many crops has been achieved, crop functional genomics studies have stepped into the big-data and high-throughput era…”
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Molecular Regulation of Plant Responses to Environmental Temperatures by Ding, Yanglin, Shi, Yiting, Yang, Shuhua

“…Temperature is a key factor governing the growth and development, distribution, and seasonal behavior of plants. The entire plant life cycle is affected by…”
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The Reference Genome of Tea Plant and Resequencing of 81 Diverse Accessions Provide Insights into Its Genome Evolution and Adaptation by Xia, Enhua, Tong, Wei, Hou, Yan, An, Yanlin, Chen, Linbo, Wu, Qiong, Liu, Yunlong, Yu, Jie, Li, Fangdong, Li, Ruopei, Li, Penghui, Zhao, Huijuan, Ge, Ruoheng, Huang, Jin, Mallano, Ali Inayat, Zhang, Yanrui, Liu, Shengrui, Deng, Weiwei, Song, Chuankui, Zhang, Zhaoliang, Zhao, Jian, Wei, Shu, Zhang, Zhengzhu, Xia, Tao, Wei, Chaoling, Wan, Xiaochun

“…Tea plant is an important economic crop, which is used to produce the world's oldest and most widely consumed tea beverages. Here, we present a high-quality…”
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WheatOmics: A platform combining multiple omics data to accelerate functional genomics studies in wheat by Ma, Shengwei, Wang, Meng, Wu, Jianhui, Guo, Weilong, Chen, Yongming, Li, Guangwei, Wang, Yanpeng, Shi, Weiming, Xia, Guangmin, Fu, Daolin, Kang, Zhensheng, Ni, Fei

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WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes by Sun, Pengchuan, Jiao, Beibei, Yang, Yongzhi, Shan, Lanxing, Li, Ting, Li, Xiaonan, Xi, Zhenxiang, Wang, Xiyin, Liu, Jianquan

“…Evidence of whole-genome duplications (WGDs) and subsequent karyotype changes has been detected in most major lineages of living organisms on Earth. To clarify…”
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Systems Biology of Plant-Microbiome Interactions by Rodriguez, Patricia A., Rothballer, Michael, Chowdhury, Soumitra Paul, Nussbaumer, Thomas, Gutjahr, Caroline, Falter-Braun, Pascal

“…In natural environments, plants are exposed to diverse microbiota that they interact with in complex ways. While plant–pathogen interactions have been…”
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Carotenoid Metabolism in Plants: The Role of Plastids by Sun, Tianhu, Yuan, Hui, Cao, Hongbo, Yazdani, Mohammad, Tadmor, Yaakov, Li, Li

“…Carotenoids are indispensable to plants and critical in human diets. Plastids are the organelles for carotenoid biosynthesis and storage in plant cells. They…”
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Toxic metals and metalloids: Uptake, transport, detoxification, phytoremediation, and crop improvement for safer food by Zhao, Fang-Jie, Tang, Zhong, Song, Jia-Jun, Huang, Xin-Yuan, Wang, Peng

“…Agricultural soils are under threat of toxic metal/metalloid contamination from anthropogenic activities, leading to excessive accumulation of arsenic (As),…”
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MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis by Schwacke, Rainer, Ponce-Soto, Gabriel Y., Krause, Kirsten, Bolger, Anthony M., Arsova, Borjana, Hallab, Asis, Gruden, Kristina, Stitt, Mark, Bolger, Marie E., Usadel, Björn

“…Genome sequences from over 200 plant species have already been published, with this number expected to increase rapidly due to advances in sequencing…”
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The Structure and Function of Major Plant Metabolite Modifications by Wang, Shouchuang, Alseekh, Saleh, Fernie, Alisdair R., Luo, Jie

“…Plants produce a myriad of structurally and functionally diverse metabolites that play many different roles in plant growth and development and in plant…”
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A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root by Zhang, Tian-Qi, Xu, Zhou-Geng, Shang, Guan-Dong, Wang, Jia-Wei

“…Cells of eukaryotic multicellular organisms have inherent heterogeneity. Recent advances in single-cell gene expression studies enable us to explore…”
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De Novo Domestication: An Alternative Route toward New Crops for the Future by Fernie, Alisdair R., Yan, Jianbing

“…Current global agricultural production must feed over 7 billion people. However, productivity varies greatly across the globe and is under threat from both…”
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Two gap-free reference genomes and a global view of the centromere architecture in rice by Song, Jia-Ming, Xie, Wen-Zhao, Wang, Shuo, Guo, Yi-Xiong, Koo, Dal-Hoe, Kudrna, Dave, Gong, Chenbo, Huang, Yicheng, Feng, Jia-Wu, Zhang, Wenhui, Zhou, Yong, Zuccolo, Andrea, Long, Evan, Lee, Seunghee, Talag, Jayson, Zhou, Run, Zhu, Xi-Tong, Yuan, Daojun, Udall, Joshua, Xie, Weibo, Wing, Rod A, Zhang, Qifa, Poland, Jesse, Zhang, Jianwei, Chen, Ling-Ling

“…Rice (Oryza sativa), a major staple throughout the world and a model system for plant genomics and breeding, was the first crop genome sequenced almost two…”
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Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes by Zhou, Xingang, Zhang, Jingyu, Khashi U Rahman, Muhammad, Gao, Danmei, Wei, Zhong, Wu, Fengzhi, Dini-Andreote, Francisco

“…Terrestrial plants can affect the growth and health of adjacent plants via interspecific interaction. Here, we studied the mechanism by which plant root…”
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Plant cytochrome P450 plasticity and evolution by Hansen, Cecilie Cetti, Nelson, David R, Møller, Birger Lindberg, Werck-Reichhart, Daniele

“…The superfamily of cytochrome P450 (CYP) enzymes plays key roles in plant evolution and metabolic diversification. This review provides a status on the CYP…”
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The Multifaceted Roles of HY5 in Plant Growth and Development by Gangappa, Sreeramaiah N., Botto, Javier F.

“…ELONGATED HYPOCOTYL5 (HY5), a member of the bZIP transcription factor family, inhibits hypocotyl growth and lateral root development, and promotes pigment…”
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A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era by Chen, Yongming, Song, Wanjun, Xie, Xiaoming, Wang, Zihao, Guan, Panfeng, Peng, Huiru, Jiao, Yuannian, Ni, Zhongfu, Sun, Qixin, Guo, Weilong

“…Plant genome sequencing has dramatically increased, and some species even have multiple high-quality reference versions. Demands for clade-specific homology…”
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Resequencing of 145 Landmark Cultivars Reveals Asymmetric Sub-genome Selection and Strong Founder Genotype Effects on Wheat Breeding in China by Hao, Chenyang, Jiao, Chengzhi, Hou, Jian, Li, Tian, Liu, Hongxia, Wang, Yuquan, Zheng, Jun, Liu, Hong, Bi, Zhihong, Xu, Fengfeng, Zhao, Jing, Ma, Lin, Wang, Yamei, Majeed, Uzma, Liu, Xu, Appels, Rudi, Maccaferri, Marco, Tuberosa, Roberto, Lu, Hongfeng, Zhang, Xueyong

“…Controlled pedigrees and the multi-decade timescale of national crop plant breeding programs offer a unique experimental context for examining how selection…”
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