Search Results - "Mohammed, Yassene"

Determination of the concentration range for 267 proteins from 21 lots of commercial human plasma using highly multiplexed multiple reaction monitoring mass spectrometry by Gaither, Claudia, Popp, Robert, Mohammed, Yassene, Borchers, Christoph H

“…Multiple reaction monitoring (MRM) is a key tool for biomarker validation and the translation of potential biomarkers into the clinic. To demonstrate the…”
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Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention by Mohammed, Yassene, Palmblad, Magnus

“…We introduce a method for data inspection in liquid separations of peptides using amino acid retention coefficients and their relative change across…”
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Visualizing and comparing results of different peptide identification methods by Mohammed, Yassene, Palmblad, Magnus

“…Abstract In mass spectrometry-based proteomics, peptides are typically identified from tandem mass spectra using spectrum comparison. A sequence search engine…”
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Inhibition of Δ24-dehydrocholesterol reductase activates pro-resolving lipid mediator biosynthesis and inflammation resolution by Körner, Andreas, Zhou, Enchen, Müller, Christoph, Mohammed, Yassene, Herceg, Sandra, Bracher, Franz, Rensen, Patrick C. N., Wang, Yanan, Mirakaj, Valbona, Giera, Martin

“…Targeting metabolism through bioactive key metabolites is an upcoming future therapeutic strategy. We questioned how modifying intracellular lipid metabolism…”
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Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays by Mohammed, Yassene, Bhowmick, Pallab, Michaud, Sarah A, Sickmann, Albert, Borchers, Christoph H

“…Abstract   MotivationLaboratory mouse is the most used animal model in biological research, largely due to its high conserved synteny with human. Researchers…”
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Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues by Dapic, Irena, Uwugiaren, Naomi, Kers, Jesper, Mohammed, Yassene, Goodlett, David R, Corthals, Garry

“…The application of proteomics to fresh frozen (FF) and formalin-fixed paraffin-embedded (FFPE) human tissues is an important development spurred on by requests…”
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Concentration Determination of >200 Proteins in Dried Blood Spots for Biomarker Discovery and Validation by Eshghi, Azad, Pistawka, Adam J., Liu, Jun, Chen, Michael, Sinclair, Nicholas J.T., Hardie, Darryl B., Elliott, Monica, Chen, Lei, Newman, Rachael, Mohammed, Yassene, Borchers, Christoph H.

“…Multiple reaction monitoring with isotope dilution assays were developed for quantification of 200 proteins in dried blood spots, with median inter-day CV of…”
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ExSTA: External Standard Addition Method for Accurate High‐Throughput Quantitation in Targeted Proteomics Experiments by Mohammed, Yassene, Pan, Jingxi, Zhang, Suping, Han, Jun, Borchers, Christoph H.

“…Purpose Targeted proteomics using MRM with stable‐isotope‐labeled internal‐standard (SIS) peptides is the current method of choice for protein quantitation in…”
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The intestinal microbiome potentially affects thrombin generation in human subjects by Mohammed, Yassene, Kootte, Ruud S., Kopatz, Wil F., Borchers, Christoph H., Büller, Harry R., Versteeg, Henri H., Nieuwdorp, Max, van Mens, Thijs E.

“…Background The intestinal microbiome plays a versatile role in the etiology of arterial thrombosis. In venous thrombosis, driven chiefly by plasma coagulation,…”
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Targeted proteomics for evaluating risk of venous thrombosis following traumatic lower‐leg injury or knee arthroscopy by Mohammed, Yassene, Touw, Carolina E., Nemeth, Banne, van Adrichem, Raymond A., Borchers, Christoph H., Rosendaal, Frits R., van Vlijmen, Bart J., Cannegieter, Suzanne C.

“…Introduction Patients with lower‐leg cast immobilization and patients undergoing knee arthroscopy have an increased risk of venous thrombosis (VT). Guidelines…”
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Fatty acid desaturation and lipoxygenase pathways support trained immunity by Ferreira, Anaísa V., Alarcon-Barrera, Juan Carlos, Domínguez-Andrés, Jorge, Bulut, Özlem, Kilic, Gizem, Debisarun, Priya A., Röring, Rutger J., Özhan, Hatice N., Terschlüsen, Eva, Ziogas, Athanasios, Kostidis, Sarantos, Mohammed, Yassene, Matzaraki, Vasiliki, Renieris, George, Giamarellos-Bourboulis, Evangelos J., Netea, Mihai G., Giera, Martin

“…Infections and vaccines can induce enhanced long-term responses in innate immune cells, establishing an innate immunological memory termed trained immunity …”
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Inhibition of DHCR24 activates LXRα to ameliorate hepatic steatosis and inflammation by Zhou, Enchen, Ge, Xiaoke, Nakashima, Hiroyuki, Li, Rumei, van der Zande, Hendrik J P, Liu, Cong, Li, Zhuang, Müller, Christoph, Bracher, Franz, Mohammed, Yassene, de Boer, Jan Freark, Kuipers, Folkert, Guigas, Bruno, Glass, Christopher K, Rensen, Patrick C N, Giera, Martin, Wang, Yanan

“…Liver X receptor (LXR) agonism has theoretical potential for treating NAFLD/NASH, but synthetic agonists induce hyperlipidemia in preclinical models…”
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Multiplexed panel of precisely quantified salivary proteins for biomarker assessment by Percy, Andrew J., Hardie, Darryl B., Jardim, Armando, Yang, Juncong, Elliott, Monica H., Zhang, Suping, Mohammed, Yassene, Borchers, Christoph H.

“…An increasingly popular “absolute” quantitative technique involves the SRM or MRM approach with stable isotope‐labeled standards (SIS). Using this approach,…”
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N -Glycoproteins Have a Major Role in MGL Binding to Colorectal Cancer Cell Lines: Associations with Overall Proteome Diversity by Pirro, Martina, Mohammed, Yassene, van Vliet, Sandra J, Rombouts, Yoann, Sciacca, Agnese, de Ru, Arnoud H, Janssen, George M C, Tjokrodirijo, Rayman T N, Wuhrer, Manfred, van Veelen, Peter A, Hensbergen, Paul J

“…Colorectal cancer (CRC) is the second-leading cause of cancer death worldwide due in part to a high proportion of patients diagnosed at advanced stages of the…”
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Oxonium Ion Guided Analysis of Quantitative Proteomics Data Reveals Site-Specific O-Glycosylation of Anterior Gradient Protein 2 (AGR2) by Pirro, Martina, Mohammed, Yassene, de Ru, Arnoud H., Janssen, George M. C., Tjokrodirijo, Rayman T. N., Madunić, Katarina, Wuhrer, Manfred, van Veelen, Peter A., Hensbergen, Paul J.

“…Developments in mass spectrometry (MS)-based analyses of glycoproteins have been important to study changes in glycosylation related to disease. Recently, the…”
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Congruence and Complementarity of Differential Mobility Spectrometry and NMR Spectroscopy for Plasma Lipidomics by Ghorasaini, Mohan, Tsezou, Konstantina Ismini, Verhoeven, Aswin, Mohammed, Yassene, Vlachoyiannopoulos, Panayiotis, Mikros, Emmanuel, Giera, Martin

“…The lipid composition of lipoprotein particles is determinative of their respective formation and function. In turn, the combination and correlation of nuclear…”
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A standardized kit for automated quantitative assessment of candidate protein biomarkers in human plasma by Percy, Andrew J, Mohammed, Yassene, Yang, Juncong, Borchers, Christoph H

“…An increasingly popular mass spectrometry-based quantitative approach for health-related research in the biomedical field involves the use of stable…”
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Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase by Smits, Wiep Klaas, Mohammed, Yassene, de Ru, Arnoud H, Cordo', Valentina, Friggen, Annemieke H, van Veelen, Peter A, Hensbergen, Paul J

“…Phosphorylation is a posttranslational modification that can affect both housekeeping functions and virulence characteristics in bacterial pathogens. In the…”
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Spatially and temporally resolved metabolome of the human oral cavity by Ciurli, Alessio, Mohammed, Yassene, Ammon, Christine, Derks, Rico J.E., Olivier-Jimenez, Damien, Ducarmon, Quinten R., Slingerland, Marije, Neefjes, Jacques, Giera, Martin

“…Saliva is a complex bodily fluid composed of secretions by major and minor salivary glands. Salivary glands and their secretions are known to be unevenly…”
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Systematic Optimization of the iMALDI Workflow for the Robust and Straightforward Quantification of Signaling Proteins in Cancer Cells by Froehlich, Bjoern C., Popp, Robert, Sobsey, Constance A., Ibrahim, Sahar, LeBlanc, Andre M., Mohammed, Yassene, Aguilar‐Mahecha, Adriana, Poetz, Oliver, Chen, Michael X., Spatz, Alan, Basik, Mark, Batist, Gerald, Zahedi, René P., Borchers, Christoph H.

“…Purpose Immuno‐MALDI (iMALDI) combines immuno‐enrichment of biomarkers with MALDI‐MS for fast, precise, and specific quantitation, making it a valuable tool…”
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