Search Results - "Model, Josh"

Achieving High Performance with FPGA-Based Computing by Herbordt, Martin C., VanCourt, Tom, Gu, Yongfeng, Sukhwani, Bharat, Conti, Al, Model, Josh, DiSabello, Doug

“…Numerous application areas, including bioinformatics and computational biology, demand increasing amounts of processing capability. In many cases, the…”
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Single pass streaming BLAST on FPGAs by Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom

“…Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to…”
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Computing Models for FPGA-Based Accelerators by Herbordt, Martin C., Gu, Yongfeng, VanCourt, Tom, Model, Josh, Sukhwani, Bharat, Chiu, Matt

“…Field-programmable gate arrays are widely considered accelerators for compute-intensive applications. A critical phase of FPGA application development is…”
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Leving high performance FPGA-based computing: Reconfigurable by HERBORDT, Martin C, VANCOURT, Tom, YONGFENG GU, SUKHWANI, Bharat, CONTI, Al, MODEL, Josh, DISABELLO, Doug

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Discrete Event Simulation of Molecular Dynamics with Configurable Logic by Model, Josh, Herbordt, Martin C.

“…Molecular dynamics simulation based on discrete event simulation (DMD) is emerging as an alternative to time-step driven molecular dynamics (MD). DMD uses…”
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Single Pass, BLAST-Like, Approximate String Matching on FPGAs by Herbordt, J.C., Model, J., Yongfeng Gu, Sukhwani, B., VanCourt, T.

“…Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to…”
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An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics by Herbordt, M.C., Kosie, F., Model, J.

“…Molecular dynamics simulation based on discrete event simulation (DMD) is emerging as an alternative to time-step driven molecular dynamics (MD). Although DMD…”
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