Search Results - "Miller, Craig R."

Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability by Sapozhnikov, Yesol, Patel, Jagdish Suresh, Ytreberg, F Marty, Miller, Craig R

“…Computational methods of predicting protein stability changes upon missense mutations are invaluable tools in high-throughput studies involving a large number…”
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Risk of disease and willingness to vaccinate in the United States: A population-based survey by Baumgaertner, Bert, Ridenhour, Benjamin J, Justwan, Florian, Carlisle, Juliet E, Miller, Craig R

“…Vaccination complacency occurs when perceived risks of vaccine-preventable diseases are sufficiently low so that vaccination is no longer perceived as a…”
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Effects of trust, risk perception, and health behavior on COVID-19 disease burden: Evidence from a multi-state US survey by Ridenhour, Benjamin J, Sarathchandra, Dilshani, Seamon, Erich, Brown, Helen, Leung, Fok-Yan, Johnson-Leon, Maureen, Megheib, Mohamed, Miller, Craig R, Johnson-Leung, Jennifer

“…Early public health strategies to prevent the spread of COVID-19 in the United States relied on non-pharmaceutical interventions (NPIs) as vaccines and…”
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Mutational Switch-Backs Can Accelerate Evolution of Francisella to a Combination of Ciprofloxacin and Doxycycline by Mehta, Heer H, Ibarra, David, Marx, Christopher J, Miller, Craig R, Shamoo, Yousif

“…Combination antimicrobial therapy has been considered a promising strategy to combat the evolution of antimicrobial resistance. is the causative agent of…”
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Priming With Rhinovirus Protects Mice Against a Lethal Pulmonary Coronavirus Infection by Cox, Garrison, Gonzalez, Andres J, Ijezie, Emmanuel C, Rodriguez, Andres, Miller, Craig R, Van Leuven, James T, Miura, Tanya A

“…Rhinoviruses (RV) have been shown to inhibit subsequent infection by heterologous respiratory viruses, including influenza viruses and severe acute respiratory…”
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A new method for estimating the size of small populations from genetic mark-recapture data by MILLER, CRAIG R., JOYCE, PAUL, WAITS, LISETTE P.

“…The use of non‐invasive genetic sampling to estimate population size in elusive or rare species is increasing. The data generated from this sampling differ…”
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Capwire: a R package for estimating population census size from non‐invasive genetic sampling by Pennell, Matthew W, Stansbury, Carisa R, Waits, Lisette P, Miller, Craig R

“…Non‐invasive genetic sampling is an increasingly popular approach for investigating the demographics of natural populations. This has also become a useful tool…”
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A long-term population monitoring approach for a wide-ranging carnivore: Noninvasive genetic sampling of gray wolf rendezvous sites in Idaho, USA by Stansbury, Carisa R., Ausband, David E., Zager, Peter, Mack, Curt M., Miller, Craig R., Pennell, Matthew W., Waits, Lisette P.

“…Various monitoring methods have been developed for large carnivores, but not all are practical or sufficiently accurate for long-term monitoring over large…”
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Lung epithelial cells have virus-specific and shared gene expression responses to infection by diverse respiratory viruses by VanLeuven, James T, Ridenhour, Benjamin J, Gonzalez, Andres J, Miller, Craig R, Miura, Tanya A

“…The severity of respiratory viral infections is partially determined by the cellular response mounted by infected lung epithelial cells. Disease prevention and…”
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Global Composition of the Bacteriophage Community in Honey Bees by Busby, Taylor J, Miller, Craig R, Moran, Nancy A, Van Leuven, James T

“…The microbial communities in animal digestive systems are critical for host development and health. They stimulate the immune system during development,…”
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Assessing Allelic Dropout and Genotype Reliability Using Maximum Likelihood by Miller, Craig R, Joyce, Paul, Waits, Lisette P

“…A growing number of population genetic studies utilize nuclear DNA microsatellite data from museum specimens and noninvasive sources. Genotyping errors are…”
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Changing folding and binding stability in a viral coat protein: a comparison between substitutions accessible through mutation and those fixed by natural selection by Miller, Craig R, Lee, Kuo Hao, Wichman, Holly A, Ytreberg, F Marty

“…Previous studies have shown that most random amino acid substitutions destabilize protein folding (i.e. increase the folding free energy). No analogous studies…”
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New Perspectives on Ebola Virus Evolution by Brown, Celeste J, Quates, Caleb J, Mirabzadeh, Christopher A, Miller, Craig R, Wichman, Holly A, Miura, Tanya A, Ytreberg, F Marty

“…Since the recent devastating outbreak of Ebola virus disease in western Africa, there has been significant effort to understand the evolution of the deadly…”
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The consistency of beneficial fitness effects of mutations across diverse genetic backgrounds by Pearson, Victoria M, Miller, Craig R, Rokyta, Darin R

“…Parallel and convergent evolution have been remarkably common observations in molecular adaptation but primarily in the context of the same genotype adapting…”
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history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): implications for conservation by Miller, C.R, Waits, L.P

“…Protein, mtDNA, and nuclear microsatellite DNA analyses have demonstrated that the Yellowstone grizzly bear has low levels of genetic variability compared with…”
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The treacheries of adaptation by Miller, Craig R

“…As fitness rises during adaptive evolution, the cost of mutation may escalate as well One of Darwin's great insights was that he took the widespread…”
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Rhinovirus Reduces the Severity of Subsequent Respiratory Viral Infections by Interferon-Dependent and -Independent Mechanisms by Van Leuven, James T, Gonzalez, Andres J, Ijezie, Emmanuel C, Wixom, Alexander Q, Clary, John L, Naranjo, Maricris N, Ridenhour, Benjamin J, Miller, Craig R, Miura, Tanya A

“…Coinfection by heterologous viruses in the respiratory tract is common and can alter disease severity compared to infection by individual virus strains. We…”
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First-step mutations for adaptation at elevated temperature increase capsid stability in a virus by Lee, Kuo Hao, Miller, Craig R, Nagel, Anna C, Wichman, Holly A, Joyce, Paul, Ytreberg, F Marty

“…The relationship between mutation, protein stability and protein function plays a central role in molecular evolution. Mutations tend to be destabilizing,…”
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Initiating a watch list for Ebola virus antibody escape mutations by Miller, Craig R, Johnson, Erin L, Burke, Aran Z, Martin, Kyle P, Miura, Tanya A, Wichman, Holly A, Brown, Celeste J, Ytreberg, F Marty

“…The 2014 Ebola virus (EBOV) outbreak in West Africa is the largest in recorded history and resulted in over 11,000 deaths. It is essential that strategies for…”
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Genetically Determined Variation in Lysis Time Variance in the Bacteriophage φX174 by Baker, Christopher W, Miller, Craig R, Thaweethai, Tanayott, Yuan, Jeffrey, Baker, Meghan Hollibaugh, Joyce, Paul, Weinreich, Daniel M

“…Researchers in evolutionary genetics recently have recognized an exciting opportunity in decomposing beneficial mutations into their proximal, mechanistic…”
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