Search Results - "Miklós, István"
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1
A Markov chain on the solution space of edge colorings of bipartite graphs
Published in Discrete Applied Mathematics (15-06-2023)“…In this paper, we exhibit an irreducible Markov chain M on the edge k-colorings of bipartite graphs based on certain properties of the solution space. We show…”
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2
Superpolynomial period lengths of the winning positions in the subtraction game
Published in International journal of game theory (22-10-2024)“…Abstract Given a finite set of positive integers, A , and starting with a heap of n chips, Alice and Bob alternate turns and on each turn a player chooses…”
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3
Constructing and sampling partite, 3-uniform hypergraphs with given degree sequence
Published in PloS one (15-05-2024)“…Partite, 3-uniform hypergraphs are 3-uniform hypergraphs in which each hyperedge contains exactly one point from each of the 3 disjoint vertex classes. We…”
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4
Sampling and counting genome rearrangement scenarios
Published in BMC bioinformatics (02-10-2015)“…Even for moderate size inputs, there are a tremendous number of optimal rearrangement scenarios, regardless what the model is and which specific question is to…”
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5
Edge disjoint caterpillar realizations
Published in Discrete Applied Mathematics (31-01-2021)“…Edge disjoint realization problems have connections for example to discrete tomography. In this paper, we consider the edge disjoint caterpillar realizations…”
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6
Constructing bounded degree graphs with prescribed degree and neighbor degree sequences
Published in Discrete Applied Mathematics (15-06-2023)“…Let D=(d1,d2,…,dn) and F=(f1,f2,…,fn) be two sequences of positive integers. We consider the following decision problems: is there a (i) multigraph, (ii)…”
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7
Dynamics of genome rearrangement in bacterial populations
Published in PLoS genetics (01-07-2008)“…Genome structure variation has profound impacts on phenotype in organisms ranging from microbes to humans, yet little is known about how natural selection acts…”
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Efficiently sampling the realizations of bounded, irregular degree sequences of bipartite and directed graphs
Published in PloS one (13-08-2018)“…Since 1997 a considerable effort has been spent on the study of the swap (switch) Markov chains on graphic degree sequences. All of these results assume some…”
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Catalytic and Stoichiometric Baeyer-Villiger Oxidation Mediated by Nonheme Peroxo-Diiron(III), Acylperoxo, and Iodosylbenzene Iron(III) Intermediates
Published in Molecules (Basel, Switzerland) (28-04-2022)“…In this paper we describe a detailed mechanistic studies on the [Fe (PBO) (CF SO ) ] ( ), [Fe (PBT) (CF SO ) ] ( ), and [Fe (PBI) ](CF SO ) ( )-catalyzed (PBO…”
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10
Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3
Published in eLife (18-01-2022)“…Hippocampal place cells are activated sequentially as an animal explores its environment. These activity sequences are internally recreated ('replayed'),…”
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11
Approximate Sampling of Graphs with Near-P-Stable Degree Intervals
Published in Annals of combinatorics (01-03-2024)“…The approximate uniform sampling of graph realizations with a given degree sequence is an everyday task in several social science, computer science,…”
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12
Packing Tree Degree Sequences
Published in Graphs and combinatorics (01-05-2020)“…A degree sequence is a list of non-negative integers, D = d 1 , d 2 , … , d n . It is called graphical if there exists a simple graph G such that the degree of…”
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13
Approximate Counting of Graphical Realizations
Published in PloS one (10-07-2015)“…In 1999 Kannan, Tetali and Vempala proposed a MCMC method to uniformly sample all possible realizations of a given graphical degree sequence and conjectured…”
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14
Exact sampling of graphs with prescribed degree correlations
Published in New journal of physics (26-08-2015)“…Many real-world networks exhibit correlations between the node degrees. For instance, in social networks nodes tend to connect to nodes of similar degree and…”
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15
Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model
Published in Molecular biology and evolution (01-09-2009)“…Homologous genes originate from a common ancestor through vertical inheritance, duplication, or horizontal gene transfer. Entire homolog families spawned by a…”
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16
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees
Published in Bioinformatics (15-10-2008)“…Motivation: Bayesian analysis is one of the most popular methods in phylogenetic inference. The most commonly used methods fix a single multiple alignment and…”
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17
The mixing time of switch Markov chains: A unified approach
Published in European journal of combinatorics (01-01-2022)“…Since 1997 a considerable effort has been spent to study the mixing time of switch Markov chains on the realizations of graphic degree sequences of simple…”
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18
Bayesian sampling of genomic rearrangement scenarios via double cut and join
Published in Bioinformatics (15-12-2010)“…Motivation: When comparing the organization of two genomes, it is important not to draw conclusions on their modes of evolution from a single most parsimonious…”
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A Peptide Vaccine Candidate Tailored to Individuals' Genetics Mimics the Multi-Targeted T Cell Immunity of COVID-19 Convalescent Subjects
Published in Frontiers in genetics (23-06-2021)“…Long-term immunity to coronaviruses likely stems from T cell activity. We present here a novel approach for the selection of immunoprevalent SARS-CoV-2-derived…”
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20
From modeling to virtual laboratory development of a continuous binary distillation column for engineering education using MATLAB and LabVIEW
Published in Computer applications in engineering education (01-09-2019)“…The utilization of computers in all aspects and scales of chemical engineering, from fundamental understanding to solution of large‐scale optimizations, is…”
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