Search Results - "Mielke, Steven P"

Visualization of the Detailed Structure of Plasmid DNA by Tanaka, Hiroyuki, Mielke, Steven P, Benham, Craig J, Kawai, Tomoji

“…We report results from scanning tunneling microscopy experiments in which supercoiling of the plasmid, pTNT, leads to localized duplex denaturation at a single…”
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Characterization of protein secondary structure from NMR chemical shifts by Mielke, Steven P, Krishnan, V V

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Photosystem trap energies and spectrally-dependent energy-storage efficiencies in the Chl d-utilizing cyanobacterium, Acaryochloris marina by Mielke, Steven P., Kiang, Nancy Y., Blankenship, Robert E., Mauzerall, David

“…Acaryochloris marina is the only species known to utilize chlorophyll (Chl) d as a principal photopigment. The peak absorption wavelength of Chl d is…”
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DNA mechanics by Benham, Craig J, Mielke, Steven P

“…We review the history of DNA mechanics and its analysis. We evaluate several methods to analyze the structures of superhelical DNA molecules, each predicated…”
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Brownian dynamics of double-stranded DNA in periodic systems with discrete salt by Mielke, Steven P, Grønbech-Jensen, Niels, Benham, Craig J

“…Numerical models of mesoscale DNA dynamics relevant to in vivo scenarios require methods that incorporate important features of the intracellular environment,…”
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Persistence Lengths of DNA Obtained from Brownian Dynamics Simulations by Mielke, Steven P, Benham, Craig J, Grønbech-Jensen, Niels

“…The persistence length of DNA has been studied for decades; however, experimentally obtained values of this quantity have not been entirely consistent. We…”
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Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA by Mielke, Steven P, Grønbech-Jensen, Niels, Krishnan, V V, Fink, William H, Benham, Craig J

“…The topological state of DNA in vivo is dynamically regulated by a number of processes that involve interactions with bound proteins. In one such process, the…”
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Transcription-driven twin supercoiling of a DNA loop: a Brownian dynamics study by Mielke, Steven P, Fink, William H, Krishnan, V V, Grønbech-Jensen, Niels, Benham, Craig J

“…The torque generated by RNA polymerase as it tracks along double-stranded DNA can potentially induce long-range structural deformations integral to mechanisms…”
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Computational approaches to the structure and dynamics of biomolecules: Dynamic modeling of DNA superhelicity and empirical estimation of protein structure by Mielke, Steven P

“…The three-dimensional structures adopted by biopolymers play an integral role in the dynamic mechanisms by which these molecules mediate physiological…”
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