Search Results - "Microbiology resource announcements"

Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal by Sah, Ranjit, Rodriguez-Morales, Alfonso J, Jha, Runa, Chu, Daniel K W, Gu, Haogao, Peiris, Malik, Bastola, Anup, Lal, Bibek Kumar, Ojha, Hemant Chanda, Rabaan, Ali A, Zambrano, Lysien I, Costello, Anthony, Morita, Kouichi, Pandey, Basu Dev, Poon, Leo L M

“…A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen…”
Get full text

Complete Genome Sequence of SARS-CoV-2 in a Tiger from a U.S. Zoological Collection by Wang, Leyi, Mitchell, Patrick K, Calle, Paul P, Bartlett, Susan L, McAloose, Denise, Killian, Mary Lea, Yuan, Fangfeng, Fang, Ying, Goodman, Laura B, Fredrickson, Richard, Elvinger, François, Terio, Karen, Franzen, Kerrie, Stuber, Tod, Diel, Diego G, Torchetti, Mia Kim

“…This report describes the identification and characterization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in a Malayan tiger in a U.S. zoo…”
Get full text

Recommendations To Prevent Taxonomic Misidentification of Genome-Sequenced Fungal Strains by Houbraken, Jos, Visagie, Cobus M, Frisvad, Jens C

Get full text

First Detection and Genome Sequence of Senecavirus A in Vietnam by Arzt, Jonathan, Bertram, Miranda R, Vu, Le T, Pauszek, Steven J, Hartwig, Ethan J, Smoliga, George R, Palinski, Rachel, Stenfeldt, Carolina, Fish, Ian H, Hoang, Bui H, Phuong, Nguyen T, Hung, Vo V, Vu, Pham P, Dung, Nguyen K, Dong, Pham V, Tien, Nguyen N, Dung, Do H

“…In 2018, senecavirus A was detected for the first time in Vietnam. This report contains the first complete genome of a senecavirus A isolate collected from…”
Get full text

Coding-Complete Genome Sequences of Two SARS-CoV-2 Isolates from Egypt by Kandeil, Ahmed, Mostafa, Ahmed, El-Shesheny, Rabeh, Shehata, Mahmoud, Roshdy, Wael H, Ahmed, Shymaa Showky, Gomaa, Mokhtar, Taweel, Ahmed El, Kayed, Ahmed E, Mahmoud, Sara H, Moatasim, Yassmin, Kutkat, Omnia, Kamel, Mina Nabil, Mahrous, Noura, Sayes, Mohamed El, Guindy, Nancy M El, Naguib, Amal, Ali, Mohamed A

“…This report announces the complete genome sequences of two severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) isolates detected in Egypt. The…”
Get full text

The Mastitis Pathogens Culture Collection by Dufour, Simon, Labrie, Josée, Jacques, Mario

“…The Mastitis Pathogen Culture Collection contains more than 16,000 mastitis-causing bacterial isolates from milk samples taken from cow quarters and bulk tanks…”
Get full text

Genome Sequencing of Wastewater Confirms the Arrival of the SARS-CoV-2 Omicron Variant at Frankfurt Airport but Limited Spread in the City of Frankfurt, Germany, in November 2021 by Agrawal, Shelesh, Orschler, Laura, Tavazzi, Simona, Greither, Robert, Gawlik, Bernd Manfred, Lackner, Susanne

“…Wastewater-based severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance of Frankfurt Airport by genome sequencing was used to detect…”
Get full text

Complete Genome Sequence of a Severe Acute Respiratory Syndrome-Related Coronavirus from Kenyan Bats by Tao, Ying, Tong, Suxiang

“…We identified a strain of betacoronavirus BtKY72/ sp./Kenya/2007 (here BtKY72) from rectal swab samples in Kenyan bats. This paper reports the complete genomic…”
Get full text

Complete Structural Predictions of the Proteome of African Swine Fever Virus Strain Georgia 2007 by Spinard, Edward, Azzinaro, Paul, Rai, Ayushi, Espinoza, Nallely, Ramirez-Medina, Elizabeth, Valladares, Alyssa, Borca, Manuel V, Gladue, Douglas P

“…Here, we announce the predicted structures of the 193 proteins encoded by African swine fever virus (ASFV) strain Georgia 2007 (ASFV-G). Previously, only the…”
Get full text

Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification by Wang, Qiong, Cole, James R

“…The RDP Classifier is one of the most popular machine learning approaches for taxonomic classification due to its robustness and relatively high accuracy. Both…”
Get full text

Identification and Whole-Genome Sequencing of a Monkeypox Virus Strain Isolated in Israel by Cohen-Gihon, Inbar, Israeli, Ofir, Shifman, Ohad, Erez, Noam, Melamed, Sharon, Paran, Nir, Beth-Din, Adi, Zvi, Anat

“…We report the whole-genome sequence of a monkeypox virus strain isolated in Israel. The strain was isolated in 2018 from a patient travelling back from West…”
Get full text

Whole-Genome Sequence of Multidrug-Resistant Escherichia coli Strains Isolated from Mice with Mastitis by Hoque, M Nazmul, Jerin, Shobnom, Faisal, Golam Mahbub, Das, Ziban Chandra, Islam, Tofazzal, Rahman, Abu Nasar M Aminoor

“…We sequenced the genomes of Escherichia coli isolates G2M6U and G6M1F, two multidrug-resistant strains that were isolated from mammary tissue and fecal…”
Get full text

microshades: An R Package for Improving Color Accessibility and Organization of Microbiome Data by Dahl, Erin M., Neer, Emory, Bowie, Kate R., Leung, Eric T., Karstens, Lisa

“…When creating figures, it is important to consider that individuals with color vision deficiency (CVD) may not perceive all colors. While there are several…”
Get full text

Draft genome of an anaerobic nitrate-reducing, benzene-degrading member of the order Thermincolales by Xiao, Johnny Z, Nesbø, Camilla L, Molenda, Olivia, Toth, Courtney R A, Edwards, Elizabeth A

“…We present a metagenome assembled genome (MAG) of an anaerobic bacterium from a nitrate-reducing, benzene-degrading enrichment culture (NRBC). The draft genome…”
Get full text

Complete genome sequence of Bacillus paramobilis sp. strain IMGN7 from soil by Jung, Hoseong, Choi, Sejin, Kim, Yeongjun, Han, Jeong A, Lee, Ho-Seok, Kim, Eun Yu

“…Here, we report the complete genome sequence of sp. strain IMGN7, which was isolated from soil in South Korea. Its complete genome size is 5.28 Mbp. This…”
Get full text

Draft genome for Pseudomonas alkylphenolica IMGN1, isolated from soil by Lee, Jaeyeon, Ku, Bon-Jin, Kim, Yeongjun, Han, Jeong A, Kim, Eun Yu, Lee, Ho-Seok

“…Biocontrol using organisms like offers a viable alternative to chemical pesticides, enhancing plant growth and reducing environmental impact. This study…”
Get full text

T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees by Carbone, Ignazio, White, James B, Miadlikowska, Jolanta, Arnold, A Elizabeth, Miller, Mark A, Magain, Nicolas, U'Ren, Jana M, Lutzoni, François

“…The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization…”
Get full text

ggpubfigs: Colorblind-Friendly Color Palettes and ggplot2 Graphic System Extensions for Publication-Quality Scientific Figures by Steenwyk, Jacob L, Rokas, Antonis

“…Clear and effective figures are central to successfully communicating scientific data. Here, we present ggpubfigs, an R package with colorblind-friendly color…”
Get full text

Draft genome sequencing of Pediococcus acidilactici strains isolated from cow's milk: unlocking insights into functional traits and applications by Siddique, Naim, Rahman, Md Morshedur, Akter, Salma, Hasan, Mehedi Mahmudul, Das, Ziban Chandra, Hoque, M Nazmul

“…is a potential probiotic bacteria isolated from diverse sources. However, strains isolated from milk, especially from raw milk of healthy cows, have not been…”
Get full text

Draft genome sequence of bacterium Bacillus proteolyticus strain IMGN4 from soil by Kim, Yeongjun, Lee, Sangmin, Kim, Eunjeong, Han, Jeong A, Kim, Eun Yu, Lee, Ho-Seok

“…Here, we present the draft genome of IMGN4, the gram-positive, soil-dwelling bacterium discovered in mountain Maemi, Republic of Korea in May 2019. The…”
Get full text