Search Results - "Michalickova, Katerina"

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine by Donaldson, Ian, Martin, Joel, de Bruijn, Berry, Wolting, Cheryl, Lay, Vicki, Tuekam, Brigitte, Zhang, Shudong, Baskin, Berivan, Bader, Gary D, Michalickova, Katerina, Pawson, Tony, Hogue, Christopher W V

“…The majority of experimentally verified molecular interaction and biological pathway data are present in the unstructured text of biomedical journal articles…”
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iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex by Razick, Sabry, Mora, Antonio, Michalickova, Katerina, Boddie, Paul, Donaldson, Ian M

“…The iRefIndex consolidates protein interaction data from ten databases in a rigorous manner using sequence-based hash keys. Working with consolidated…”
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BIR Pipeline for Preparation of Phylogenomic Data by Kumar, Surendra, Krabberød, Anders K., Neumann, Ralf S., Michalickova, Katerina, Zhao, Sen, Zhang, Xiaoli, Shalchian-Tabrizi, Kamran

“…Summary We present a pipeline named BIR (Blast, Identify and Realign) developed for phylogenomic analyses. BIR is intended for the identification of gene…”
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SeqHound: biological sequence and structure database as a platform for bioinformatics research by Michalickova, Katerina, Bader, Gary D, Dumontier, Michel, Lieu, Hao, Betel, Doron, Isserlin, Ruth, Hogue, Christopher W V

“…SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server…”
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Species-specific protein sequence and fold optimizations by Dumontier, Michel, Michalickova, Katerina, Hogue, Christopher W V

“…An organism's ability to adapt to its particular environmental niche is of fundamental importance to its survival and proliferation. In the largest study of…”
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You & AI: A Research Computing Hackathon: Poster Abstract by DesLauriers, James, Michalickova, Katerina, Pinney, John, Gao, Liam, Cooling, Chris

“…In June 2023, the Imperial College London Graduate School's Research Computing and Data Science group invited thirty PhD students for a one-day Hackathon on…”
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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry by Figeys, Daniel, Ho, Yuen, Gruhler, Albrecht, Heilbut, Adrian, Bader, Gary D, Moore, Lynda, Adams, Sally-Lin, Millar, Anna, Taylor, Paul, Bennett, Keiryn, Boutilier, Kelly, Yang, Lingyun, Wolting, Cheryl, Donaldson, Ian, Schandorff, Søren, Shewnarane, Juanita, Vo, Mai, Taggart, Joanne, Goudreault, Marilyn, Muskat, Brenda, Alfarano, Cris, Dewar, Danielle, Lin, Zhen, Michalickova, Katerina, Willems, Andrew R, Sassi, Holly, Nielsen, Peter A, Rasmussen, Karina J, Andersen, Jens R, Johansen, Lene E, Hansen, Lykke H, Jespersen, Hans, Podtelejnikov, Alexandre, Nielsen, Eva, Crawford, Janne, Poulsen, Vibeke, Sørensen, Birgitte D, Matthiesen, Jesper, Hendrickson, Ronald C, Gleeson, Frank, Pawson, Tony, Moran, Michael F, Durocher, Daniel, Mann, Matthias, Hogue, Christopher W. V, Tyers, Mike

“…The recent abundance of genome sequence data has brought an urgent need for systematic proteomics to decipher the encoded protein networks that dictate…”
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A survey of protein interaction data and multigenic inherited disorders by Mora, Antonio, Michalickova, Katerina, Donaldson, Ian M

“…Multigenic diseases are often associated with protein complexes or interactions involved in the same pathway. We wanted to estimate to what extent this is true…”
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BIR Pipeline for Preparation of Phylogenomic Data by Surendra Kumar, Anders K. Krabberød, Ralf S. Neumann, Katerina Michalickova, Sen Zhao, Xiaoli Zhang, Kamran Shalchian-Tabrizi

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Mutation profiling of mismatch repair-deficient colorectal cancers using an in silico genome scan to identify coding microsatellites by PARK, Jane, BETEL, Doron, GRYFE, Robert, MICHALICKOVA, Katerina, DI NICOLA, Nando, GALLINGER, Steven, HOGUE, Christopher W. V, REDSTON, Mark

“…Human colorectal, endometrial, and gastric cancers with defective DNA mismatch repair (MMR) have microsatellite instability, a unique molecular alteration…”
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Mutations of the α2(V) Chain of Type V Collagen Impair Matrix Assembly and Produce Ehlers-Danlos Syndrome Type I by Michalickova, Katerina, Susic, Miki, Willing, Marcia C., Wenstrup, Richard J., Cole, William G.

“…Ehlers-Danlos syndrome (EDS) is a heterogeneous connective tissue disorder that severely impairs the structure and function of the skin, joints, eyes and blood…”
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The contribution of DNA base damage to human cancer is modulated by the base excision repair interaction network by Arczewska, Katarzyna D, Michalickova, Katerina, Donaldson, Ian M, Nilsen, Hilde

“…Base excision repair (BER) is a major mode of repair of DNA base damage. BER is required for maintenance of genetic stability, which is important in the…”
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SeqHound: An integrated bioinformatics resource and its applications by Michalickova, Katerina

“…SeqHound is an integrated bioinformatics database system. SeqHound provides a resource of basic biological information and enables hypothesis driven…”
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Mutation profiling of mismatch repair-deficient colorectal cncers using an in silico genome scan to identify coding microsatellites by Park, Jane, Betel, Doron, Gryfe, Robert, Michalickova, Katerina, Di Nicola, Nando, Gallinger, Steven, Hogue, Christopher W V, Redston, Mark

“…Human colorectal, endometrial, and gastric cancers with defective DNA mismatch repair (MMR) have microsatellite instability, a unique molecular alteration…”
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X-chromosome inactivation in females with deletions at Xq27-q28 by Michalickova, Katerina

“…A girl with biochemically and clinically typical Hunter disease was described in 1990 by our group. The recessive X-linked disease was caused by a…”
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