Search Results - "Meyer, Patrick E."

minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information by Meyer, Patrick E, Lafitte, Frédéric, Bontempi, Gianluca

“…This paper presents the R/Bioconductor package minet (version 1.1.6) which provides a set of functions to infer mutual information networks from a dataset…”
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Automated Open-Hardware Multiwell Imaging Station for Microorganisms Observation by Gervasi, Alain, Cardol, Pierre, Meyer, Patrick E.

“…Bright field microscopes are particularly useful tools for biologists for cell and tissue observation, phenotyping, cell counting, and so on. Direct cell…”
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Open-hardware wireless controller and 3D-printed pumps for efficient liquid manipulation by Gervasi, Alain, Cardol, Pierre, Meyer, Patrick E.

“…[Display omitted] Many routines in biological experiments require the precise handling of liquid volumes in the range of microliters up to liters. In this…”
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Modeling technology diffusion of complementary goods: The case of hydrogen vehicles and refueling infrastructure by Meyer, Patrick E., Winebrake, James J.

“…Hydrogen has emerged as a possible transportation fuel for addressing long-term, sustainable energy supply, security, and environmental problems. Yet, there…”
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Information-Theoretic Inference of Large Transcriptional Regulatory Networks by Meyer, Patrick, Kontos, Kevin, Lafitte, Frederic, Bontempi, Gianluca

“…The paper presents MRNET, an original method for inferring genetic networks from microarray data. The method is based on maximum relevance/minimum redundancy…”
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Study of Meta-analysis strategies for network inference using information-theoretic approaches by Pham, Ngoc C, Haibe-Kains, Benjamin, Bellot, Pau, Bontempi, Gianluca, Meyer, Patrick E

“…Reverse engineering of gene regulatory networks (GRNs) from gene expression data is a classical challenge in systems biology. Thanks to high-throughput…”
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Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks by Marbach, Daniel, Roy, Sushmita, Ay, Ferhat, Meyer, Patrick E, Candeias, Rogerio, Kahveci, Tamer, Bristow, Christopher A, Kellis, Manolis

“…Gaining insights on gene regulation from large-scale functional data sets is a grand challenge in systems biology. In this article, we develop and apply…”
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Distinction of Lymphoma from Sarcoidosis on 18F-FDG PET/CT: Evaluation of Radiomics-Feature–Guided Machine Learning Versus Human Reader Performance by Lovinfosse, Pierre, Ferreira, Marta, Withofs, Nadia, Jadoul, Alexandre, Derwael, Céline, Frix, Anne-Noelle, Guiot, Julien, Bernard, Claire, Diep, Anh Nguyet, Donneau, Anne-Françoise, Lejeune, Marie, Bonnet, Christophe, Vos, Wim, Meyer, Patrick E, Hustinx, Roland

“…Sarcoidosis and lymphoma often share common features on 18F-FDG PET/CT, such as intense hypermetabolic lesions in lymph nodes and multiple organs. We aimed at…”
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[18F]FDG PET radiomics to predict disease-free survival in cervical cancer: a multi-scanner/center study with external validation by Ferreira, Marta, Lovinfosse, Pierre, Hermesse, Johanne, Decuypere, Marjolein, Rousseau, Caroline, Lucia, François, Schick, Ulrike, Reinhold, Caroline, Robin, Philippe, Hatt, Mathieu, Visvikis, Dimitris, Bernard, Claire, Leijenaar, Ralph T. H., Kridelka, Frédéric, Lambin, Philippe, Meyer, Patrick E., Hustinx, Roland

“…Purpose To test the performances of native and tumour to liver ratio (TLR) radiomic features extracted from pre-treatment 2-[ 18 F] fluoro-2-deoxy-D-glucose ([…”
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Distinction of Lymphoma from Sarcoidosis on 18 F-FDG PET/CT: Evaluation of Radiomics-Feature-Guided Machine Learning Versus Human Reader Performance by Lovinfosse, Pierre, Ferreira, Marta, Withofs, Nadia, Jadoul, Alexandre, Derwael, Céline, Frix, Anne-Noelle, Guiot, Julien, Bernard, Claire, Diep, Anh Nguyet, Donneau, Anne-Françoise, Lejeune, Marie, Bonnet, Christophe, Vos, Wim, Meyer, Patrick E, Hustinx, Roland

“…Sarcoidosis and lymphoma often share common features on F-FDG PET/CT, such as intense hypermetabolic lesions in lymph nodes and multiple organs. We aimed at…”
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NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference by Bellot, Pau, Olsen, Catharina, Salembier, Philippe, Oliveras-Vergés, Albert, Meyer, Patrick E

“…In the last decade, a great number of methods for reconstructing gene regulatory networks from expression data have been proposed. However, very few tools and…”
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Using a Structural Root System Model to Evaluate and Improve the Accuracy of Root Image Analysis Pipelines by Lobet, Guillaume, Koevoets, Iko T, Noll, Manuel, Meyer, Patrick E, Tocquin, Pierre, Pagès, Loïc, Périlleux, Claire

“…Root system analysis is a complex task, often performed with fully automated image analysis pipelines. However, the outcome is rarely verified by ground-truth…”
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Correction to: [18F]FDG PET radiomics to predict disease-free survival in cervical cancer: a multi-scanner/center study with external validation by Ferreira, Marta, Lovinfosse, Pierre, Hermesse, Johanne, Decuypere, Marjolein, Rousseau, Caroline, Lucia, François, Schick, Ulrike, Reinhold, Caroline, Robin, Philippe, Hatt, Mathieu, Visvikis, Dimitris, Bernard, Claire, Leijenaar, Ralph T. H., Kridelka, Frédéric, Lambin, Philippe, Meyer, Patrick E., Hustinx, Roland

“…A correction to this paper has been published: https://doi.org10.1007/s00259-021-05397-x…”
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Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies by Atkinson, Jonathan A., Lobet, Guillaume, Noll, Manuel, Meyer, Patrick E., Griffiths, Marcus, Wells, Darren M.

“…Abstract Genetic analyses of plant root systems require large datasets of extracted architectural traits. To quantify such traits from images of root systems,…”
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Total Fuel-Cycle Analysis of Heavy-Duty Vehicles Using Biofuels and Natural Gas-Based Alternative Fuels by Meyer, Patrick E., Green, Erin H., Corbett, James J., Mas, Carl, Winebrake, James J.

“…Heavy-duty vehicles (HDVs) present a growing energy and environmental concern worldwide. These vehicles rely almost entirely on diesel fuel for propulsion and…”
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On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information by Olsen, Catharina, Meyer, Patrick E, Bontempi, Gianluca

“…The reverse engineering of transcription regulatory networks from expression data is gaining large interest in the bioinformatics community. An important…”
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Energy Use and Emissions from Marine Vessels: A Total Fuel Life Cycle Approach by Winebrake, James J., Corbett, James J., Meyer, Patrick E.

“…Regional and global air pollution from marine transportation is a growing concern. In discerning the sources of such pollution, researchers have become…”
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Study of Meta-analysis Strategies for Network Inference Using Information-Theoretic Approaches by Ngoc Cam Pham, Haibe-Kains, Benjamin, Bellot, Pau, Bontempi, Gianluca, Meyer, Patrick E.

“…Reverse engineering of gene regulatory networks (GRNs) from gene expression data is a classical challenge in systems biology. Thanks to high-throughput…”
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18FFDG PET radiomics to predict disease-free survival in cervical cancer: a multi-scanner/center study with external validation by Ferreira, Marta, Lovinfosse, Pierre, Hermesse, Johanne, Decuypere, Marjolein, Rousseau, Caroline, Lucia, François, Schick, Ulrike, Reinhold, Caroline, Robin, Philippe, Hatt, Mathieu, Visvikis, Dimitris, Bernard, Claire, Leijenaar, Ralph T H, Kridelka, Frédéric, Lambin, Philippe, Meyer, Patrick E, Hustinx, Roland

“…To test the performances of native and tumour to liver ratio (TLR) radiomic features extracted from pre-treatment 2-[18F] fluoro-2-deoxy-D-glucose ([18F]FDG)…”
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Study of Normalization and Aggregation Approaches for Consensus Network Estimation by Bellot, Pau, Salembier, Philippe, Oliveras, Albert, Meyer, Patrick E.

“…Inferring gene regulatory networks from expression data is a very difficult problem that has raised the interest of the scientific community. Different…”
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