Search Results - "Merelli, Emanuela"

RNA secondary structure factorization in prime tangles by Marchei, Daniele, Merelli, Emanuela

“…Background Due to its key role in various biological processes, RNA secondary structures have always been the focus of in-depth analyses, with great efforts…”
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Agent-based models for detecting the driving forces of biomolecular interactions by Maestri, Stefano, Merelli, Emanuela, Pettini, Marco

“…Agent-based modelling and simulation have been effectively applied to the study of complex biological systems, especially when composed of many interacting…”
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Process calculi may reveal the equivalence lying at the heart of RNA and proteins by Maestri, Stefano, Merelli, Emanuela

“…The successful use of process calculi to specify behavioural models allows us to compare RNA and protein folding processes from a new perspective. We model the…”
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Automatic generation of pseudoknotted RNAs taxonomy by Quadrini, Michela, Tesei, Luca, Merelli, Emanuela

“…The ability to compare RNA secondary structures is important in understanding their biological function and for grouping similar organisms into families by…”
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An algebraic language for RNA pseudoknots comparison by Quadrini, Michela, Tesei, Luca, Merelli, Emanuela

“…RNA secondary structure comparison is a fundamental task for several studies, among which are RNA structure prediction and evolution. The comparison can…”
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Topological classifier for detecting the emergence of epileptic seizures by Piangerelli, Marco, Rucco, Matteo, Tesei, Luca, Merelli, Emanuela

“…Objective An innovative method based on topological data analysis is introduced for classifying EEG recordings of patients affected by epilepsy. We construct a…”
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Machine learning models predicting multidrug resistant urinary tract infections using "DsaaS" by Mancini, Alessio, Vito, Leonardo, Marcelli, Elisa, Piangerelli, Marco, De Leone, Renato, Pucciarelli, Sandra, Merelli, Emanuela

“…The scope of this work is to build a Machine Learning model able to predict patients risk to contract a multidrug resistant urinary tract infection (MDR UTI)…”
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Topological Characterization of Complex Systems: Using Persistent Entropy by Emanuela Merelli, Matteo Rucco, Peter Sloot, Luca Tesei

“…In this paper, we propose a methodology for deriving a model of a complex system by exploiting the information extracted from topological data analysis…”
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Agent-Based Learning Model for the Obesity Paradox in RCC by Belenchia, Matteo, Rocchetti, Giacomo, Maestri, Stefano, Cimadamore, Alessia, Montironi, Rodolfo, Santoni, Matteo, Merelli, Emanuela

“…A recent study on the immunotherapy treatment of renal cell carcinoma reveals better outcomes in obese patients compared to lean subjects. This enigmatic…”
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BioWMS: a web-based Workflow Management System for bioinformatics by Bartocci, Ezio, Corradini, Flavio, Merelli, Emanuela, Scortichini, Lorenzo

“…An in-silico experiment can be naturally specified as a workflow of activities implementing, in a standardized environment, the process of data and control…”
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A Graph Grammar for Modelling RNA Folding by Mamuye, Adane Letta, Merelli, Emanuela, Tesei, Luca

“…We propose a new approach for modelling the process of RNA folding as a graph transformation guided by the global value of free energy. Since the folding…”
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Time to organize the bioinformatics resourceome by Cannata, Nicola, Merelli, Emanuela, Altman, Russ B

“…J. D. Wren [1] The field of bioinformatics has blossomed in the last ten years, and as a result, there is a large and increasing number of researchers…”
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Biowep: a workflow enactment portal for bioinformatics applications by Romano, Paolo, Bartocci, Ezio, Bertolini, Guglielmo, De Paoli, Flavio, Marra, Domenico, Mauri, Giancarlo, Merelli, Emanuela, Milanesi, Luciano

“…The huge amount of biological information, its distribution over the Internet and the heterogeneity of available software tools makes the adoption of new data…”
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A multi-level model for self-adaptive systems by Merelli, Emanuela, Paoletti, Nicola, Tesei, Luca

“…This work introduces a general multi-level model for self-adaptive systems. A self-adaptive system is seen as composed by two levels: the lower level…”
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jHoles: A Tool for Understanding Biological Complex Networks via Clique Weight Rank Persistent Homology by Binchi, Jacopo, Merelli, Emanuela, Rucco, Matteo, Petri, Giovanni, Vaccarino, Francesco

“…Complex networks equipped with topological data analysis are one of the promising tools in the study of biological systems (e.g. evolution dynamics, brain…”
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Multiple verification in computational modeling of bone pathologies by Liò, Pietro, Merelli, Emanuela, Paoletti, Nicola

“…We introduce a model checking approach to diagnose the emerging of bone pathologies. The implementation of a new model of bone remodeling in PRISM has led to…”
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Disease processes as hybrid dynamical systems by Liò, Pietro, Merelli, Emanuela, Paoletti, Nicola

“…We investigate the use of hybrid techniques in complex processes of infectious diseases. Since predictive disease models in biomedicine require a multiscale…”
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Publisher Correction: Process calculi may reveal the equivalence lying at the heart of RNA and proteins by Maestri, Stefano, Merelli, Emanuela

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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Multiscale Bone Remodelling with Spatial P Systems by Cacciagrano, Diletta, Corradini, Flavio, Merelli, Emanuela, Tesei, Luca

“…Many biological phenomena are inherently multiscale, i.e. they are characterized by interactions involving different spatial and temporal scales…”
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ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots by Quadrini, Michela, Tesei, Luca, Merelli, Emanuela

“…Abstract Summary Current methods for comparing RNA secondary structures are based on tree representations and exploit edit distance or alignment algorithms…”
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