Search Results - "Menon, Vipin K"

Truvari: refined structural variant comparison preserves allelic diversity by English, Adam C, Menon, Vipin K, Gibbs, Richard A, Metcalf, Ginger A, Sedlazeck, Fritz J

“…The fundamental challenge of multi-sample structural variant (SV) analysis such as merging and benchmarking is identifying when two SVs are the same. Common…”
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Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk by Behera, Sairam, Belyeu, Jonathan R, Chen, Xiao, Paulin, Luis F, Nguyen, Ngoc Quynh H, Newman, Emma, Mahmoud, Medhat, Menon, Vipin K, Qi, Qibin, Joshi, Parag, Marcovina, Santica, Rossi, Massimiliano, Roller, Eric, Han, James, Onuchic, Vitor, Avery, Christy L, Ballantyne, Christie M, Rodriguez, Carlos J, Kaplan, Robert C, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Yu, Bing, Boerwinkle, Eric, Eberle, Michael A, Sedlazeck, Fritz J

“…The abundance of Lp(a) protein holds significant implications for the risk of cardiovascular disease (CVD), which is directly impacted by the copy number (CN)…”
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Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion by Piedra, Felipe-Andrés, Henke, David, Rajan, Anubama, Muzny, Donna M, Doddapaneni, Harsha, Menon, Vipin K, Hoffman, Kristi L, Ross, Matthew C, Javornik Cregeen, Sara J, Metcalf, Ginger, Gibbs, Richard A, Petrosino, Joseph F, Avadhanula, Vasanthi, Piedra, Pedro A

“…Infections by non-segmented negative-strand RNA viruses (NNSV) are widely thought to entail gradient gene expression from the well-established existence of a…”
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Unveiling microbial diversity: harnessing long-read sequencing technology by Agustinho, Daniel P., Fu, Yilei, Menon, Vipin K., Metcalf, Ginger A., Treangen, Todd J., Sedlazeck, Fritz J.

“…Long-read sequencing has recently transformed metagenomics, enhancing strain-level pathogen characterization, enabling accurate and complete…”
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Rare Variants in Genes Encoding Subunits of the Epithelial Na + Channel Are Associated With Blood Pressure and Kidney Function by Blobner, Brandon M., Kirabo, Annet, Kashlan, Ossama B., Sheng, Shaohu, Arnett, Donna K., Becker, Lewis C., Boerwinkle, Eric, Carlson, Jenna C., Gao, Yan, Gibbs, Richard A., He, Jiang, Irvin, Marguerite R., Kardia, Sharon L.R., Kelly, Tanika N., Kooperberg, Charles, McGarvey, Stephen T., Menon, Vipin K., Montasser, May E., Naseri, Take, Redline, Susan, Reiner, Alexander P., Reupena, Muagututi‘a S., Smith, Jennifer A., Sun, Xiao, Vaidya, Dhananjay, Viaud-Martinez, Karine A., Weeks, Daniel E., Yanek, Lisa R., Zhu, Xiaofeng, Minster, Ryan L., Kleyman, Thomas R.

“…The epithelial Na channel (ENaC) is intrinsically linked to fluid volume homeostasis and blood pressure. Specific rare mutations in , , and , genes encoding…”
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Drivers of transcriptional variance in human intestinal epithelial organoids by Criss, 2nd, Zachary K, Bhasin, Nobel, Di Rienzi, Sara C, Rajan, Anubama, Deans-Fielder, Kali, Swaminathan, Ganesh, Kamyabi, Nabiollah, Zeng, Xi-Lei, Doddapaneni, Harsha, Menon, Vipin K, Chakravarti, Deepavali, Estrella, Clarissa, Yu, Xiaomin, Patil, Ketki, Petrosino, Joseph F, Fleet, James C, Verzi, Michael P, Christakos, Sylvia, Helmrath, Michael A, Arimura, Sumimasa, DePinho, Ronald A, Britton, Robert A, Maresso, Anthony W, Grande-Allen, K Jane, Blutt, Sarah E, Crawford, Sue E, Estes, Mary K, Ramani, Sasirekha, Shroyer, Noah F

“…Human intestinal epithelial organoids (enteroids and colonoids) are tissue cultures used for understanding the physiology of the human intestinal epithelium…”
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Fully resolved assembly of Cryptosporidium parvum by Menon, Vipin K, Okhuysen, Pablo C, Chappell, Cynthia L, Mahmoud, Medhat, Mahmoud, Medhat, Meng, Qingchang, Doddapaneni, Harsha, Vee, Vanesa, Han, Yi, Salvi, Sejal, Bhamidipati, Sravya, Kottapalli, Kavya, Weissenberger, George, Shen, Hua, Ross, Matthew C, Hoffman, Kristi L, Cregeen, Sara Javornik, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Petrosino, Joseph F, Sedlazeck, Fritz J

“…Abstract Background Cryptosporidium parvum is an apicomplexan parasite commonly found across many host species with a global infection prevalence in human…”
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Symptomatic and Asymptomatic Cryptosporidium Infections in Children in a Semi-Urban Slum Community in Southern India by AJJAMPUR, Sitara S. R, SARKAR, Rajiv, SANKARAN, Premi, KANNAN, Arun, MENON, Vipin K, MULIYIL, Jayaprakash, WARD, Honorine, KANG, Gagandeep

“…Cryptosporidium is a leading cause of childhood diarrhea in developing countries. We investigated symptomatic and asymptomatic cryptosporidiosis in 20 children…”
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Rare Genetic Variants Associated With Sudden Cardiac Arrest in the Young: A Prospective, Population-Based Study by Holmstrom, Lauri, Chaudhary, Ninad S., Nakamura, Kotoka, Chugh, Harpriya, Uy-Evanado, Audrey, Norby, Faye, Metcalf, Ginger A., Menon, Vipin K., Yu, Bing, Boerwinkle, Eric, Chugh, Sumeet S., Akdemir, Zeynep, Kransdorf, Evan P.

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Sa1914 The Genomic Landscape of Human Colon Adenomas Reveals Early Driver Mutations and a TGF-β-CEA Regulated Profile by Menon, Vipin K, Raju, Gottumukkala S, Chen, Jian, Su, Xiaoping, Majumdar, Avijit, Shin, Ji-Hyun, Li, Shulin, Shetty, Kirti, Wu, Xifeng, Weston, Brian R, Miller, Ethan, Stroehlein, John R, Davila, Marta L, Shafi, Mehnaz A, Rashid, Asif, Kallakury, Bhaskar V, Thirumurthi, Selvi, McMurray, John S, Lin, Sue-Hwa, Jogunoori, Wilma, Mishra, Lopa

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Sa1851 Prognostic Significance of TGF-β Signaling in Human Hepatocellular Carcinoma by Chen, Jian, Chen, Jiun-Sheng, Zhang, Jianping, Gi, YoungJin, Phan, Liem M, Muñoz, Nina M, Katz, Lior H, Shin, Ji-Hyun, Jeong, Yun Seong, Menon, Vipin K, Jogunoori, Wilma, Mishra, Bibhuti, Javle, Milind, Su, Xiaoping, Farci, Patrizia, Shetty, Kirti, Wu, Xifeng, Hung, Mien-Chie, Herlong, Franklin, Davila, Marta L, Stroehlein, John R, Shaw, Kenna R, Wang, Xuemei, Morris, Jeffrey S, Akbani, Rehan, Mishra, Lopa

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Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine [version 1; peer review: 1 approved, 1 approved with reservations] by Mahmoud, Medhat, Gener, Alejandro Rafael, Khayat, Michael M, English, Adam C, Balaji, Advait, Zhou, Anbo, Hehn, Andreas, Fungtammasan, Arkarachai, Chrisman, Brianna Sierra, Chin, Chen-Shan, Lin, Chiao-Feng, Lo, Chun-Hsuan, Liao, Chunxiao, Carvalho, Claudia M. B, Diesh, Colin, Symer, David E, Kalra, Divya, Albin, Dreycey, Aliyev, Elbay, Dawson, Eric T, Venner, Eric, Foertter, Fernanda, Bae, Gigon, Du, Haowei, Daw, Joyjit, Wang, Junzhou, Akagi, Keiko, Phan, Lon, Jochum, Michael, Edrisi, Mohammadamin, Shah, Nirav N, Wang, Qi, Fullem, Robert, Zheng, Rong, Kalla, Sara E, Mitra, Shakuntala, Treangen, Todd J, Mahaganapathy, Vaidhyanathan, Malladi, Venkat Sai, Menon, Vipin K, Fu, Yilei, Yin, Yongze, Feng, Yuanqing, Hefferon, Tim, Sedlazeck, Fritz J, Busby, Ben

“…In October 2019, 46 scientists from around the world participated in the first National Center for Biotechnology Information (NCBI) Structural Variation (SV)…”
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Rare Variants in Genes Encoding Subunits of the Epithelial Na+ Channel Are Associated With Blood Pressure and Kidney Function by Blobner, Brandon M., Kirabo, Annet, Kashlan, Ossama B., Sheng, Shaohu, Arnett, Donna K., Becker, Lewis C., Boerwinkle, Eric, Carlson, Jenna C., Gao, Yan, Gibbs, Richard A., He, Jiang, Irvin, Marguerite R., Kardia, Sharon L.R., Kelly, Tanika N., Kooperberg, Charles, McGarvey, Stephen T., Menon, Vipin K., Montasser, May E., Naseri, Take, Redline, Susan, Reiner, Alexander P., Reupena, Muagututi‘a S., Smith, Jennifer A., Sun, Xiao, Vaidya, Dhananjay, Viaud-Martinez, Karine A., Weeks, Daniel E., Yanek, Lisa R., Zhu, Xiaofeng, Minster, Ryan L., Kleyman, Thomas R.

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Identification of allele-specific KIV-2 repeats and impact on Lp by Behera, Sairam, Belyeu, Jonathan R, Chen, Xiao, Paulin, Luis F, Nguyen, Ngoc Quynh H, Newman, Emma, Mahmoud, Medhat, Menon, Vipin K, Qi, Qibin, Joshi, Parag, Marcovina, Santica, Rossi, Massimiliano, Roller, Eric, Han, James, Onuchic, Vitor, Avery, Christy L, Ballantyne, Christie M, Rodriguez, Carlos J, Kaplan, Robert C, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Yu, Bing, Boerwinkle, Eric, Eberle, Michael A, Sedlazeck, Fritz J

“…The abundance of Lp(a) protein holds significant implications for the risk of cardiovascular disease (CVD), which is directly impacted by the copy number (CN)…”
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Abstract 67: Genomic and mutational profiling of human colon adenomas reveals early driver mutations and a TGF-β-CEA regulated profile by Menon, Vipin K., Gottumukkala, Raju S., Chen, Jian, Su, Xiaoping, Mistry, Nipun, Majumdar, Avijit, Shin, Ji-Hyun, Li, Shulin, Shetty, Kirti, Wu, Xifeng, Weston, Brian, Miller, Ethan, Stroehlein, John R., Davila, Marta L., Shafi, Mehnaz A., Rashid, Asif, Kallakury, Bhaskar V., Thirumurthi, Selvi, McMurray, John S., Lin, Sue-Hwa, Jogunoori, Wilma, Mishra, Lopa

“…Abstract Introduction: Colorectal cancer (CRC) is the third most commonly diagnosed cancer in the world with 143,700 newly diagnosed cases in 2012. The rapid…”
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