Search Results - "Mehringer, Svenja"

Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries by Mehringer, Svenja, Seiler, Enrico, Droop, Felix, Darvish, Mitra, Rahn, René, Vingron, Martin, Reinert, Knut

“…We present a novel data structure for searching sequences in large databases: the Hierarchical Interleaved Bloom Filter (HIBF). It is extremely fast and space…”
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Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences by Seiler, Enrico, Mehringer, Svenja, Darvish, Mitra, Turc, Etienne, Reinert, Knut

“…We present Raptor, a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide…”
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Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments by Darvish, Mitra, Seiler, Enrico, Mehringer, Svenja, Rahn, René, Reinert, Knut

“…Abstract Motivation The ever-growing size of sequencing data is a major bottleneck in bioinformatics as the advances of hardware development cannot keep up…”
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Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in human diseases and other traits by Beyter, Doruk, Ingimundardottir, Helga, Oddsson, Asmundur, Eggertsson, Hannes P., Bjornsson, Eythor, Jonsson, Hakon, Atlason, Bjarni A., Kristmundsdottir, Snaedis, Mehringer, Svenja, Hardarson, Marteinn T., Gudjonsson, Sigurjon A., Magnusdottir, Droplaug N., Jonasdottir, Aslaug, Jonasdottir, Adalbjorg, Kristjansson, Ragnar P., Sverrisson, Sverrir T., Holley, Guillaume, Palsson, Gunnar, Stefansson, Olafur A., Eyjolfsson, Gudmundur, Olafsson, Isleifur, Sigurdardottir, Olof, Torfason, Bjarni, Masson, Gisli, Helgason, Agnar, Thorsteinsdottir, Unnur, Holm, Hilma, Gudbjartsson, Daniel F., Sulem, Patrick, Magnusson, Olafur T., Halldorsson, Bjarni V., Stefansson, Kari

“…Long-read sequencing (LRS) promises to improve the characterization of structural variants (SVs). We generated LRS data from 3,622 Icelanders and identified a…”
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The SeqAn C++ template library for efficient sequence analysis: A resource for programmers by Reinert, Knut, Dadi, Temesgen Hailemariam, Ehrhardt, Marcel, Hauswedell, Hannes, Mehringer, Svenja, Rahn, René, Kim, Jongkyu, Pockrandt, Christopher, Winkler, Jörg, Siragusa, Enrico, Urgese, Gianvito, Weese, David

“…•A current list of efficient SeqAn modules is given.•The work contains a descriptive list of research tools making use of SeqAn.•We give short examples of the…”
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