Search Results - "McSally, James"

Modulation of Hoogsteen dynamics on DNA recognition by Xu, Yu, McSally, James, Andricioaei, Ioan, Al-Hashimi, Hashim M.

“…In naked duplex DNA, G–C and A–T Watson-Crick base pairs exist in dynamic equilibrium with their Hoogsteen counterparts. Here, we used nuclear magnetic…”
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A riboswitch separated from its ribosome-binding site still regulates translation by Schroeder, Griffin M, Akinyemi, Olayinka, Malik, Jeffrey, Focht, Caroline M, Pritchett, Elizabeth M, Baker, Cameron D, McSally, James P, Jenkins, Jermaine L, Mathews, David H, Wedekind, Joseph E

“…Abstract Riboswitches regulate downstream gene expression by binding cellular metabolites. Regulation of translation initiation by riboswitches is posited to…”
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Entropy Calculations of Hoogsteen and Watson-Crick Conformations by McSally, James, Andricioaei, Ioan

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m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs by Zhou, Huiqing, Kimsey, Isaac J, Nikolova, Evgenia N, Sathyamoorthy, Bharathwaj, Grazioli, Gianmarc, McSally, James, Bai, Tianyu, Wunderlich, Christoph H, Kreutz, Christoph, Andricioaei, Ioan, Al-Hashimi, Hashim M

“…The B-DNA double helix can dynamically accommodate G-C and A-T base pairs in either Watson-Crick or Hoogsteen configurations. Here, we show that G-C(+) (in…”
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Computational Studies of Hoogsteen Base Pairs in Nucleic Acids and Developments in Enhanced Sampling Simulation Techniques by McSally, James

“…The further study of the fundamental physical properties of nucleic acids, can have far reaching impacts. These highly dynamic biological macromolecules can be…”
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Ab initio study of the mechanism of carboxylic acids cross-ketonization on monoclinic zirconia via condensation to beta-keto acids followed by decarboxylation by Ignatchenko, Alexey V., McSally, James P., Bishop, Marc D., Zweigle, Joshua

“…[Display omitted] •Options for each step of the catalytic mechanism are analyzed and rated.•Reversible steps are enolization, condensation, dehydration, except…”
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m1A and m1G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs by Zhou, Huiqing, Kimsey, Isaac J, Nikolova, Evgenia N, Sathyamoorthy, Bharathwaj, Grazioli, Gianmarc, McSally, James, Bai, Tianyu, Wunderlich, Christoph H, Kreutz, Christoph, Andricioaei, Ioan, Al-Hashimi, Hashim M

“…The inability of A-form RNA to form Hoogsteen base pairs provides a mechanism for how post-transcriptional modifications can disrupt RNA structure and might…”
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m super(1)A and m super(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs by Zhou, Huiqing, Kimsey, Isaac J, Nikolova, Evgenia N, Sathyamoorthy, Bharathwaj, Grazioli, Gianmarc, McSally, James, Bai, Tianyu, Wunderlich, Christoph H, Kreutz, Christoph, Andricioaei, Ioan, Al-Hashimi, Hashim M

“…The B-DNA double helix can dynamically accommodate G-C and A-T base pairs in either Watson-Crick or Hoogsteen configurations. Here, we show that G-C super(+)…”
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m1A and m1G Potently Disrupt A-RNA Structure Due to the Intrinsic Instability of Hoogsteen Base Pairs by Zhou, Huiqing, Kimsey, Isaac J., Nikolova, Evgenia N., Sathyamoorthy, Bharathwaj, Grazioli, Gianmarc, McSally, James, Bai, Tianyu, Wunderlich, Christoph H., Kreutz, Christoph, Andricioaei, Ioan, Al-Hashimi, Hashim M.

“…The B-DNA double helix can dynamically accommodate G–C and A–T base pairs in either Watson-Crick or Hoogsteen configurations. Here, we show that G–C + and A–U…”
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Molecular dynamics comparison of E. coli WrbA apoprotein and holoprotein by Reha, David, Harish, Balasubramanian, Sinha, Dhiraj, Kukacka, Zdenek, McSally, James, Ettrichova, Olga, Novak, Petr, Carey, Jannette, Ettrich, Rüdiger

“…WrbA is a novel multimeric flavodoxin-like protein of unknown function. A recent high-resolution X-ray crystal structure of E. coli WrbA holoprotein revealed a…”
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