Search Results - "McNicol, Jim"

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis by Kalyna, Maria, Simpson, Craig G, Syed, Naeem H, Lewandowska, Dominika, Marquez, Yamile, Kusenda, Branislav, Marshall, Jacqueline, Fuller, John, Cardle, Linda, McNicol, Jim, Dinh, Huy Q, Barta, Andrea, Brown, John W S

“…Alternative splicing (AS) coupled to nonsense-mediated decay (NMD) is a post-transcriptional mechanism for regulating gene expression. We have used a…”
Get full text

Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects by Jones, Matthew A., Williams, Brian A., McNicol, Jim, Simpson, Craig G., Brown, John W.S., Harmer, Stacey L.

“…The circadian clock plays a crucial role in coordinating plant metabolic and physiological functions with predictable environmental variables, such as dusk and…”
Get full text

Comparison of Tuber Proteomes of Potato Varieties, Landraces, and Genetically Modified Lines by Lehesranta, Satu J, Davies, Howard V, Shepherd, Louise V.T, Nunan, Naoise, McNicol, Jim W, Auriola, Seppo, Koistinen, Kaisa M, Suomalainen, Soile, Kokko, Harri I, Kärenlampi, Sirpa O

“…Crop improvement by genetic modification remains controversial, one of the major issues being the potential for unintended effects. Comparative safety…”
Get full text

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana by Raczynska, Katarzyna Dorota, Simpson, Craig G, Ciesiolka, Adam, Szewc, Lukasz, Lewandowska, Dominika, McNicol, Jim, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur

“…The nuclear cap-binding protein complex (CBC) participates in 5' splice site selection of introns that are proximal to the mRNA cap. However, it is not known…”
Get full text

Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds by Mazzitelli, Luca, Hancock, Robert D, Haupt, Sophie, Walker, Paul G, Pont, Simon D.A, McNicol, Jim, Cardle, Linda, Morris, Jenny, Viola, Roberto, Brennan, Rex, Hedley, Peter E, Taylor, Mark A

“…Bud break in raspberry (Rubus idaeus L.) is often poor and uneven, with many of the subapical buds remaining in a dormant state. In order to determine the…”
Get full text

Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots by Singh, Brajesh K, Nunan, Naoise, Ridgway, Karyn P, McNicol, Jim, Young, J. Peter W, Daniell, Tim J, Prosser, James I, Millard, Peter

“…Soils support an enormous microbial diversity, but the ecological drivers of this diversity are poorly understood. Interactions between the roots of individual…”
Get full text

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts by Simpson, Craig G, Fuller, John, Maronova, Monika, Kalyna, Maria, Davidson, Diane, McNicol, Jim, Barta, Andrea, Brown, John W.S

“…Alternative splicing (AS) increases the proteomic and functional capacity of genomes through the generation of alternative mRNA transcripts from the same gene…”
Get full text

atlas of gene expression from seed to seed through barley development by Druka, A, Muehlbauer, G, Druka, I, Caldo, R, Baumann, U, Rostoks, N, Schreiber, A, Wise, R, Close, T, Kleinhofs, A

“…Assaying relative and absolute levels of gene expression in a diverse series of tissues is a central step in the process of characterizing gene function and a…”
Get full text

Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions by Tuomainen, Marjo H., Nunan, Naoise, Lehesranta, Satu J., Tervahauta, Arja I., Hassinen, Viivi H., Schat, Henk, Koistinen, Kaisa M., Auriola, Seppo, McNicol, Jim, Kärenlampi, Sirpa O.

“…Thlaspi caerulescens is increasingly acknowledged as one of the best models for studying metal hyperaccumulation in plants. In order to study the mechanisms…”
Get full text

Highly parallel gene-to-BAC addressing using microarrays by Liu, Hui, McNicol, Jim, Bayer, Micha, Morris, Jenny A, Cardle, Linda, Marshall, David F, Schulte, Daniela, Stein, Nils, Shi, Bu-Jun, Taudien, Stefan, Waugh, Robbie, Hedley, Peter E

“…Second-generation sequencing now provides the potential for low-cost generation of whole-genome sequences. However, for large-genome organisms with high…”
Get full text

Sheep-urine-induced changes in soil microbial community structure by Nunan, Naoise, Singh, Brajesh, Reid, Eileen, Ord, Brian, Papert, Artemis, Squires, Julie, Prosser, Jim I., Wheatley, Ron E., McNicol, Jim, Millard, Peter

“…Abstract Soil microbial communities play an important role in nutrient cycling and nutrient availability, especially in unimproved soils. In grazed pastures,…”
Get full text

Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape by Cullen, Danny W, Squire, Geoffrey R, McNicol, Jim W, Jacobs, Jennifer H, Osborne, Juliet L, Ford, Linda, Ramsay, Gavin, Scrimgeour, Charlie, Young, Mark W

“…BACKGROUND: High erucic acid oilseed rape (HEAR) was tested as a source crop for estimates of regional geneflow. Two methods to detect HEAR in low erucic acid…”
Get full text

Multivariate analysis of protein profiles of metal hyperaccumulatorThlaspi caerulescens accessions by Tuomainen, Marjo H., Nunan, Naoise, Lehesranta, Satu J., Tervahauta, Arja I., Hassinen, Viivi H., Schat, Henk, Koistinen, Kaisa M., Auriola, Seppo, McNicol, Jim, Kärenlampi, Sirpa O.

Get full text

Using the truncated auto-poisson model for spatially correlated counts of vegetation by Augustin, N.H, McNicol, J, Marriott, C.A

“…With vegetation data there are often physical reasons for believing that the response of neighbors has a direct influence on the response at a particular…”
Get full text

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana by Raczynska, Katarzyna Dorota, Stepien, Agata, Kierzkowski, Daniel, Kalak, Malgorzata, Bajczyk, Mateusz, McNicol, Jim, Simpson, Craig G, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur

“…How alternative splicing (AS) is regulated in plants has not yet been elucidated. Previously, we have shown that the nuclear cap-binding protein complex…”
Get full text

Mapping and expression of genes associated with raspberry fruit ripening and softening by Simpson, Craig G., Cullen, Danny W., Hackett, Christine A., Smith, Kay, Hallett, Paul D., McNicol, Jim, Woodhead, Mary, Graham, Julie

“…Key message QTL mapping identifies a range of underlying and unrelated genes with apparent roles in raspberry fruit ripening and softening that show…”
Get full text

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana by Raczynska, Katarzyna Dorota, Stepien, Agata, Kierzkowski, Daniel, Kalak, Malgorzata, Bajczyk, Mateusz, McNicol, Jim, Simpson, Craig G, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur

Get full text

Molecular regulation of somatic embryogenesis in potato: an auxin led perspective by Sharma, Sanjeev Kumar, Millam, Steve, Hedley, Peter E, McNicol, Jim, Bryan, Glenn J

“…Potato internodal segments (INS) treated with the auxin 2,4-dichlorophenoxyacetic acid can be induced to develop somatic embryos upon their transfer to an…”
Get full text

Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini‐exon splicing reporter and affect alternative splicing of endogenous genes differentially by Simpson, Craig G, Lewandowska, Dominika, Liney, Michele, Davidson, Diane, Chapman, Sean, Fuller, John, McNicol, Jim, Shaw, Paul, Brown, John W. S

“…This paper examines the function of Arabidopsis thaliana AtPTB1 and AtPTB2 as plant splicing factors. The effect on splicing of overexpression of AtPTB1 and…”
Get full text

Arabidopsis PTB 1 and PTB 2 proteins negatively regulate splicing of a mini‐exon splicing reporter and affect alternative splicing of endogenous genes differentially by Simpson, Craig G., Lewandowska, Dominika, Liney, Michele, Davidson, Diane, Chapman, Sean, Fuller, John, McNicol, Jim, Shaw, Paul, Brown, John W. S.

“…Summary This paper examines the function of Arabidopsis thaliana At PTB 1 and At PTB 2 as plant splicing factors. The effect on splicing of overexpression of…”
Get full text