Search Results - "McInerny, Greg"
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Ten Simple Rules for Curating and Facilitating Small Workshops
Published in PLoS computational biology (01-07-2016)“…Was it the organizers, attendees (see Rule 3), goals, size, subject matter, timetabling, activities, venue, location, seating plan, seats, timetable, time…”
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Information visualisation for science and policy: engaging users and avoiding bias
Published in Trends in ecology & evolution (Amsterdam) (01-03-2014)“…•Science and policy rely on reliable and unbiased communications.•Visualisations and graphics are a powerful means to communicate.•Ecology lacks appropriate…”
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Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents
Published in Journal of biogeography (01-12-2012)“…Aim: Biotic interactions — within guilds or across trophic levels — have widely been ignored in species distribution models (SDMs). This synthesis outlines the…”
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Ditch the niche - is the niche a useful concept in ecology or species distribution modelling?
Published in Journal of biogeography (01-12-2012)“…In this first of three papers we examine the use of niche concepts in ecology and especially in species distribution modelling (SDM). This paper deliberately…”
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Stitch the niche - a practical philosophy and visual schematic for the niche concept
Published in Journal of biogeography (01-12-2012)“…By over-focusing on precise definitions, ecology has produced a confused idea of the niche concept. This, our second paper, develops a practical philosophy for…”
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Ten simple rules for effective computational research
Published in PLoS computational biology (01-03-2014)“… In particular, the use and development of software tools is becoming vital for investigating scientific hypotheses, and a wide range of scientists are…”
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Pitch the niche - taking responsibility for the concepts we use in ecology and species distribution modelling
Published in Journal of biogeography (01-12-2012)“…In a discussion it is often easier to staunchly reject or offer resolute support for an idea. This third paper on the niche concept aims to develop a balanced…”
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‘Niche’ or ‘distribution’ modelling? A response to Warren
Published in Trends in ecology & evolution (Amsterdam) (01-04-2013)Get full text
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Fine‐scale environmental variation in species distribution modelling: regression dilution, latent variables and neighbourly advice
Published in Methods in ecology and evolution (01-06-2011)“…Summary 1. Developing the next‐generation of species distribution modelling (SDM) requires solutions to a number of widely recognised problems. Here, we…”
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Integrated assessment models for ecologists: the present and the future
Published in Global ecology and biogeography (01-02-2014)“…Aim Human impacts on the biosphere are a matter of urgent and growing concern, with ecologists increasingly being asked to project biodiversity futures. The…”
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Ten simple rules for a successful cross-disciplinary collaboration
Published in PLoS computational biology (01-04-2015)“… Regulators and policy-makers have realized the power of such collaborations, for example, in the 80 billion Euro "Horizon 2020" EU Framework Programme for…”
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Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche
Published in Journal of biogeography (01-12-2012)“…The spatial distribution of a species is determined by dynamic processes such as reproduction, mortality and dispersal. Conventional static species…”
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Significance of Sighting Rate in Inferring Extinction and Threat
Published in Conservation biology (01-04-2006)“…We are now entering a time of immense environmental upheaval in which, increasingly, experts are required to provide conservation assessments. Quantitative…”
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When is a species extinct? Quantitative inference of threat and extinction from herbarium data
Published in Lankesteriana (01-02-2016)“…We are now entering a time of immense environ- mental upheaval were, increasingly, experts are required to provide conservation assessments. …”
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moveHMM: an R package for the statistical modelling of animal movement data using hidden Markov models
Published in Methods in ecology and evolution (01-11-2016)“…Summary Due to the substantial progress in tracking technology, recent years have seen an explosion in the amount of movement data being collected. This has…”
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iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)
Published in Methods in ecology and evolution (01-12-2016)“…Summary Hill numbers (or the effective number of species) have been increasingly used to quantify the species/taxonomic diversity of an assemblage. The…”
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ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Published in Methods in ecology and evolution (01-01-2017)“…Summary We present an r package, ggtree, which provides programmable visualization and annotation of phylogenetic trees. ggtree can read more tree file formats…”
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Troubling Trends in Scientific Software Use
Published in Science (American Association for the Advancement of Science) (17-05-2013)“…"Blind trust" is dangerous when choosing software to support research. Software pervades every domain of science ( 1 – 3 ), perhaps nowhere more decisively…”
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Co-designing grounded visualisations of the Food-Water-Energy nexus to enable urban sustainability transformations
Published in Environmental science & policy (01-04-2024)“…In the past few years, the Food-Water-Energy (FWE) Nexus has emerged as a key concept to address the complex relationships and interdependencies between food,…”
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Scientists and software - surveying the species distribution modelling community
Published in Diversity & distributions (01-03-2015)“…Aim Software use is ubiquitous in the species distribution modelling (SDM) domain; nearly every scientist working on SDM either uses or develops specialist SDM…”
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