Search Results - "McGinty, Hande Kucuk"

How to Develop a Drug Target Ontology: KNowledge Acquisition and Representation Methodology (KNARM) by Küçük McGinty, Hande, Visser, Ubbo, Schürer, Stephan

“…Technological advancements in many fields have led to huge increases in data production, including data volume, diversity, and the speed at which new data is…”
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Maximizing data value for biopharma through FAIR and quality implementation: FAIR plus Q by Harrow, Ian, Balakrishnan, Rama, Küçük McGinty, Hande, Plasterer, Tom, Romacker, Martin

“…•FAIRification use cases at Roche and AstraZeneca.•More prospective FAIRification expected in future.•Broad applicability of data quality assessment…”
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Links between critical proteins drive the controllability of protein interaction networks by Wuchty, Stefan, Boltz, Toni, Küçük‐McGinty, Hande

“…Focusing on the interactomes of Homo sapiens, Saccharomyces cerevisiae, and Escherichia coli, we investigated interactions between controlling proteins. In…”
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Deep learning accurately predicts food categories and nutrients based on ingredient statements by Ma, Peihua, Zhang, Zhikun, Li, Ying, Yu, Ning, Sheng, Jiping, Küçük McGinty, Hande, Wang, Qin, Ahuja, Jaspreet K.C.

“…•The largest food ingredient database for deep learning training was published, named BFPD 134 k.•MLP-TF-SE algorithm achieved the highest food classification…”
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Standardization of assay representation in the Ontology for Biomedical Investigations by Vita, Randi, Zheng, Jie, Jackson, Rebecca, Dooley, Damion, Overton, James A, Miller, Mark A, Berrios, Daniel C, Scheuermann, Richard H, He, Yongqun, McGinty, Hande Küçük, Brochhausen, Mathias, Lin, Aisyah Yu, Jain, Sagar B, Chibucos, Marcus C, Judkins, John, Giglio, Michelle G, Feng, Irene Y, Burns, Gully, Brush, Matthew H, Peters, Bjoern, Stoeckert, Jr, Christian J

“…The Ontology for Biomedical Investigations (OBI) underwent a focused review of assay term annotations, logic and hierarchy with a goal to improve and…”
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Drug target ontology to classify and integrate drug discovery data by Lin, Yu, Mehta, Saurabh, Küçük-McGinty, Hande, Turner, John Paul, Vidovic, Dusica, Forlin, Michele, Koleti, Amar, Nguyen, Dac-Trung, Jensen, Lars Juhl, Guha, Rajarshi, Mathias, Stephen L, Ursu, Oleg, Stathias, Vasileios, Duan, Jianbin, Nabizadeh, Nooshin, Chung, Caty, Mader, Christopher, Visser, Ubbo, Yang, Jeremy J, Bologa, Cristian G, Oprea, Tudor I, Schürer, Stephan C

“…One of the most successful approaches to develop new small molecule therapeutics has been to start from a validated druggable protein target. However, only a…”
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Knowledge Acquisition and Representation Methodology (KNARM) and Its Applications by McGinty, Hande Kucuk

“…Technological advancements in many fields have led to huge increases in data production, including data volume, diversity, and the speed at which new data is…”
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Evolving BioAssay Ontology (BAO): modularization, integration and applications by Abeyruwan, Saminda, Vempati, Uma D, Küçük-McGinty, Hande, Visser, Ubbo, Koleti, Amar, Mir, Ahsan, Sakurai, Kunie, Chung, Caty, Bittker, Joshua A, Clemons, Paul A, Brudz, Steve, Siripala, Anosha, Morales, Arturo J, Romacker, Martin, Twomey, David, Bureeva, Svetlana, Lemmon, Vance, Schürer, Stephan C

“…The lack of established standards to describe and annotate biological assays and screening outcomes in the domain of drug and chemical probe discovery is a…”
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A GUI for OBO Foundry's ROBOT Library to Encourage Usability and Adoption by Liu, Luke, Zhang, Yinglun, McGinty, Hande Kucuk, Amith, Muhammad

“…Since its inception in 2013, OBO ROBOT has become a known ontology development tool to manage and develop new ontologies. OBO ROBOT is available as a command…”
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