Search Results - "McCloskey, J A"

The Small Subunit rRNA Modification Database by McCloskey, James A., Rozenski, Jef

“…The Small Subunit rRNA Modification Database provides a listing of reported post-transcriptionally modified nucleosides and sequence sites in small subunit…”
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The RNA Modification Database: 1999 update by Rozenski, Jef, Crain, Pamela F., McCloskey, James A.

“…The RNA Modification Database (http://medlib.med.utah.edu/RNAmods/) provides a comprehensive listing of naturally modified nucleosides in RNA. Each file…”
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Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales by McCloskey, J A, Graham, D E, Zhou, S, Crain, P F, Ibba, M, Konisky, J, Söll, D, Olsen, G J

“…Post-transcriptional modifications in archaeal RNA are known to be phylogenetically distinct but relatively little is known of tRNA from the Methanococci, a…”
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Interpretation of Oligonucleotide Mass Spectra for Determination of Sequence Using Electrospray Ionization and Tandem Mass Spectrometry by Ni, Jinsong, Pomerantz, Steven C, Rozenski, Jef, Zhang, Yizhou, McCloskey, James A

“…Procedures are described for interpretation of mass spectra from collision-induced dissociation of polycharged oligonucleotides produced by electrospray…”
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Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides by BANGS, J. D, CRAIN, P. F, HASHIZUME, T, MCCLOSKEY, J. A, BOOTHROYD, J. C

“…Synthesis of mRNA in kinetoplastid protozoa involves the process of trans-splicing, in which an identical 39-41-nucleotide (depending on the species) mini-exon…”
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Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria) by EDMONDS, C. G, CRAIN, P. F, RAMESH GUPTA, HASHIZUME, T, HOCART, C. H, KOWALAK, J. A, POMERANTZ, S. C, STETTER, K. O, MCCLOSKEY, J. A

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Identities and Phylogenetic Comparisons of Posttranscriptional Modifications in 16 S Ribosomal RNA from Haloferax volcanii by Kowalak, Jeffrey A., Bruenger, Eveline, Crain, Pamela F., McCloskey, James A.

“…Small subunit (16 S) rRNA from the archaeonHaloferax volcanii, for which sites of modification were previously reported, was examined using mass spectrometry…”
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Structural Characterization of U-1915 in Domain IV from Escherichia Coli 23S Ribosomal RNA as 3-Methylpseudouridine by Kowalak, Jeffrey A., Bruenger, Eveline, Hashizume, Takeshi, Peltier, John M., Ofengand, James, McCloskey, James A.

“…Mass spectrometry-based methods have been used to study post-transcriptional modification in the 1900–1974 nt segment of domain IV in 23S rRNA of Escherichia…”
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Posttranscriptional modification of tRNA in psychrophilic bacteria by Dalluge, J J, Hamamoto, T, Horikoshi, K, Morita, R Y, Stetter, K O, McCloskey, J A

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Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria by Tomita, K, Ueda, T, Ishiwa, S, Crain, P.F, McCloskey, J.A, Watanabe, K

“…Mitochondrial (mt) tRNATrp, tRNAlle, tRNAMet, tRNASerGCU, tRNAAsn and tRNALys were purified from Drosophila melanogaster (fruit fly) and their nucleotide…”
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Determination of Nearest Neighbors in Nucleic Acids by Mass Spectrometry by Rozenski, Jef, McCloskey, James A

“…The identification of nearest-neighbor residues in nucleic acids provides useful constraints on establishment of base composition and sequence and is…”
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Structure of the archaeal transfer RNA nucleoside G-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)) by Gregson, J.M., Crain, P.F., Edmonds, C.G., Gupta, R., Hashizume, T., Phillipson, D.W., McCloskey, J.A.

“…A number of post-transcriptional modifications in tRNA are phylogenetically characteristic of the bacterial, eukaryal, or archaeal domains, both with respect…”
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A Novel Modified Nucleoside Found at the First Position of the Anticodon of Methionine tRNA from Bovine Liver Mitochondria by Moriya, Jiro, Yokogawa, Takashi, Wakita, Kawori, Ueda, Takuya, Nishikawa, Kazuya, Crain, Pamela F, Hashizume, Takeshi, Pomerantz, Steven C, McCloskey, James A

“…Methionine tRNA was purified from bovine liver mitochondria, and its nucleotide sequence was determined. The tRNA possesses only three posttranscriptionally…”
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An anticodon sequence mutant of Escherichia coli initiator tRNA: possible importance of a newly acquired base modification next to the anticodon on its activity in initiation by Mangroo, D, Limbach, P A, McCloskey, J A, RajBhandary, U L

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The Effect of Backbone Charge on the Collision-Induced Dissociation of Oligonucleotides by Bartlett, Michael G., McCloskey, James A., Manalili, Sherilynn, Griffey, Richard H.

“…Knowledge of the effects of structural changes in oligonucleotides on their dissociation reactions is important in the application of mass spectrometry to…”
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The RNA modification database by Crain, Pamela F., McCloskey, James A.

“…The RNA modification database provides a comprehensive listing of posttranscriptionally modified nucleosides from all RNAs, and is maintained as an updated…”
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Determination of oligonucleotide composition from mass spectrometrically measured molecular weight by Pomerantz, Steven C., Kowalak, Jeffrey A., McCloskey, James A.

“…Extensive calculations for molecular mass versus subunit composition have been made for oligonucleotides from RNA and DNA to determine the extent to which base…”
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Constituents of nucleic acids: overview and strategy by McCloskey, J A

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5S rRNA modification in the hyperthermophilic archaea Sulfolobus solfataricus and Pyrodictium occultum by Bruenger, E, Kowalak, J A, Kuchino, Y, McCloskey, J A, Mizushima, H, Stetter, K O, Crain, P F

“…The 5S rRNAs from Sulfolobus solfataricus and Pyrodictium occultum were digested to nucleosides and analyzed using directly-combined HPLC/mass spectrometry. P…”
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Transfer RNA(5-methylaminomethyl-2-thiouridine)-methyltransferase from Escherichia coli K-12 has two enzymatic activities by Hagervall, T G, Edmonds, C G, McCloskey, J A, Björk, G R

“…The tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase, which is involved in the biosynthesis of the modified nucleoside…”
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