Search Results - "McCarthy, Charley G. P"

Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes by McCarthy, Charley G P, Fitzpatrick, David A

“…The oomycetes are a class of microscopic, filamentous eukaryotes within the (SAR) supergroup which includes ecologically significant animal and plant…”
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Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi by Rahman, Farzana, Hassan, Mehedi, Hanano, Abdulsamie, Fitzpatrick, David A, McCarthy, Charley G P, Murphy, Denis J

“…Caleosin/peroxygenases, CLO/PXG, (designated PF05042 in Pfam) are a group of genes/proteins with anomalous distributions in eukaryotic taxa. We have previously…”
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Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade by O'Brien, Caoimhe E, McCarthy, Charley G P, Walshe, Annie E, Shaw, Dennis R, Sumski, Deirdre A, Krassowski, Tadeusz, Fitzpatrick, David A, Butler, Geraldine

“…Diutina catenulata (Candida catenulata) is an ascomycetous yeast that has been isolated from humans, animals and environmental sources. The species is a…”
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Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages by McCarthy, Charley G P, Fitzpatrick, David A

“…While most commonly associated with prokaryotes, horizontal gene transfer (HGT) can also have a significant influence on the evolution of microscopic…”
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Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments by Baker, Brittany A., Gutiérrez-Preciado, Ana, Rodríguez del Río, Álvaro, McCarthy, Charley G. P., López-García, Purificación, Huerta-Cepas, Jaime, Susko, Edward, Roger, Andrew J., Eme, Laura, Moreira, David

“…Extremely halophilic archaea (Haloarchaea, Nanohaloarchaeota, Methanonatronarchaeia and Halarchaeoplasmatales) thrive in saturating salt concentrations where…”
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Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23 by O'Connor, Eoin, McGowan, Jamie, McCarthy, Charley G P, Amini, Aniça, Grogan, Helen, Fitzpatrick, David A

“…is an extensively cultivated edible mushroom. Demand for cultivation is continuously growing and difficulties associated with breeding programs now means…”
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Filtering artifactual signal increases support for Xenacoelomorpha and Ambulacraria sister relationship in the animal tree of life by Mulhair, Peter O, McCarthy, Charley G P, Siu-Ting, Karen, Creevey, Christopher J, O'Connell, Mary J

“…Conflicting studies place a group of bilaterian invertebrates containing xenoturbellids and acoelomorphs, the Xenacoelomorpha, as either the primary emerging…”
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Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching by Hopes, Tayah, Norris, Karl, Agapiou, Michaela, McCarthy, Charley G P, Lewis, Philip A, O’Connell, Mary J, Fontana, Juan, Aspden, Julie L

“…Abstract Ribosomes have long been thought of as homogeneous macromolecular machines, but recent evidence suggests they are heterogeneous and could be…”
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Improving Orthologous Signal and Model Fit in Datasets Addressing the Root of the Animal Phylogeny by McCarthy, Charley G P, Mulhair, Peter O, Siu-Ting, Karen, Creevey, Christopher J, O’Connell, Mary J

“…Abstract There is conflicting evidence as to whether Porifera (sponges) or Ctenophora (comb jellies) comprise the root of the animal phylogeny. Support for…”
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Pan-genome analyses of model fungal species by McCarthy, Charley G P, Fitzpatrick, David A

“…The concept of the species 'pan-genome', the union of 'core' conserved genes and all 'accessory' non-conserved genes across all strains of a species, was first…”
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Antibiotic resistomes of healthy pig faecal metagenomes by Joyce, Aoife, McCarthy, Charley G P, Murphy, Sinead, Walsh, Fiona

“…Antibiotic resistance reservoirs within food-producing animals are thought to be a risk to animal and human health. This study describes the minimum natural…”
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Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes by McCarthy, Charley G P, Fitzpatrick, David A

“…Although the pan-genome concept originated in prokaryote genomics, an increasing number of eukaryote species pan-genomes have also been analysed. However,…”
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Multiple Approaches to Phylogenomic Reconstruction of the Fungal Kingdom by McCarthy, Charley G P, Fitzpatrick, David A

“…Fungi are possibly the most diverse eukaryotic kingdom, with over a million member species and an evolutionary history dating back a billion years. Fungi have…”
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Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae by O'Brien, Caoimhe E, McCarthy, Charley G. P, Walshe, Annie E, Shaw, Dennis R, Sumski, Deirdre A, Krassowski, Tadeusz, Fitzpatrick, David A, Butler, Geraldine

“…Diutina catenulata (Candida catenulata) is an ascomycetous yeast that has been isolated from humans, animals and environmental sources. The species is a…”
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