Search Results - "Maziar Heidari"

Fluctuations, Finite-Size Effects and the Thermodynamic Limit in Computer Simulations: Revisiting the Spatial Block Analysis Method by Heidari, Maziar, Kremer, Kurt, Potestio, Raffaello, Cortes-Huerto, Robinson

“…The spatial block analysis (SBA) method has been introduced to efficiently extrapolate thermodynamic quantities from finite-size computer simulations of a…”
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Circuit Topology Analysis of Polymer Folding Reactions by Heidari, Maziar, Schiessel, Helmut, Mashaghi, Alireza

“…Circuit topology is emerging as a versatile measure to classify the internal structures of folded linear polymers such as proteins and nucleic acids. The…”
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Combined Experimental and Theoretical Investigation of Heating Rate on Growth of Iron Oxide Nanoparticles by Sharifi Dehsari, Hamed, Heidari, Maziar, Halda Ribeiro, Anielen, Tremel, Wolfgang, Jakob, Gerhard, Donadio, Davide, Potestio, Raffaello, Asadi, Kamal

“…Thermal decomposition is a promising route for the synthesis of highly monodisperse magnetite nanoparticles. However, the apparent simplicity of the synthesis…”
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Refined Protein–Sugar Interactions in the Martini Force Field by Heidari, Maziar, Sikora, Mateusz, Hummer, Gerhard

“…Sugar molecules play important roles as mediators of biomolecular interactions in cellular functions, disease, and infections. Molecular dynamics simulations…”
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Ordering of Functional Groups by Confining Grafted Chains, Star Polymers, or Polymer-Stabilized Nanoparticles by Heidari, Maziar, Labousse, Matthieu, Leibler, Ludwik

“…Understanding and controlling the self-organization of functionalized sites are crucial in biological systems, in catalysis, and to target drug delivery. Here…”
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A topology framework for macromolecular complexes and condensates by Heidari, Maziar, Moes, Duane, Schullian, Otto, Scalvini, Barbara, Mashaghi, Alireza

“…Macromolecular assemblies such as protein complexes and protein/RNA condensates are involved in most fundamental cellular processes. The arrangement of…”
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Visualizing the disordered nuclear transport machinery in situ by Yu, Miao, Heidari, Maziar, Mikhaleva, Sofya, Tan, Piau Siong, Mingu, Sara, Ruan, Hao, Reinkemeier, Christopher D., Obarska-Kosinska, Agnieszka, Siggel, Marc, Beck, Martin, Hummer, Gerhard, Lemke, Edward A.

“…The approximately 120 MDa mammalian nuclear pore complex (NPC) acts as a gatekeeper for the transport between the nucleus and cytosol 1 . The central channel…”
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Spatially Resolved Thermodynamic Integration: An Efficient Method To Compute Chemical Potentials of Dense Fluids by Heidari, Maziar, Kremer, Kurt, Cortes-Huerto, Robinson, Potestio, Raffaello

“…Many popular methods for the calculation of chemical potentials rely on the insertion of test particles into the target system. In the case of liquids and…”
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Development of a Virtual Cell Model to Predict Cell Response to Substrate Topography by Heydari, Tiam, Heidari, Maziar, Mashinchian, Omid, Wojcik, Michal, Xu, Ke, Dalby, Matthew John, Mahmoudi, Morteza, Ejtehadi, Mohammad Reza

“…Cells can sense and respond to changes in the topographical, chemical, and mechanical information in their environment. Engineered substrates are increasingly…”
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Unwrapping NPT Simulations to Calculate Diffusion Coefficients by Bullerjahn, Jakob Tómas, von Bülow, Sören, Heidari, Maziar, Hénin, Jérôme, Hummer, Gerhard

“…In molecular dynamics simulations in the NPT ensemble at constant pressure, the size and shape of the periodic simulation box fluctuate with time. For particle…”
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Polymer time crystal: Mechanical activation of reversible bonds by low-amplitude high frequency excitations by Heidari, Maziar, Gaichies, Théophile, Leibler, Ludwik, Labousse, Matthieu

“…Reversible supramolecular bonds play an important role in materials science and in biological systems. The equilibrium between open and closed bonds and the…”
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Concurrent coupling of realistic and ideal models of liquids and solids in Hamiltonian adaptive resolution simulations by Heidari, Maziar, Cortes-Huerto, Robinson, Kremer, Kurt, Potestio, Raffaello

“… To understand the properties of a complex system it is often illuminating to perform a comparison with a simpler, even idealised one. A prototypical…”
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Tackling the Limitations of Copolymeric Small Interfering RNA Delivery Agents by a Combined Experimental–Computational Approach by Tabujew, Ilja, Heidari, Maziar, Freidel, Christoph, Helm, Mark, Tebbe, Lars, Wolfrum, Uwe, Nagel-Wolfrum, Kerstin, Koynov, Kaloian, Biehl, Philip, Schacher, Felix H, Potestio, Raffaello, Peneva, Kalina

“…Despite the first successful applications of nonviral delivery vectors for small interfering RNA in the treatment of illnesses, such as the respiratory…”
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Cell-Imprinted Substrates Act as an Artificial Niche for Skin Regeneration by Mashinchian, Omid, Bonakdar, Shahin, Taghinejad, Hossein, Satarifard, Vahid, Heidari, Maziar, Majidi, Mohammad, Sharifi, Shahriar, Peirovi, Afshin, Saffar, Samaneh, Taghinejad, Mohammad, Abdolahad, Mohammad, Mohajerzadeh, Shams, Shokrgozar, Mohammad Ali, Rezayat, Seyed Mahdi, Ejtehadi, Mohammad R, Dalby, Matthew J, Mahmoudi, Morteza

“…Bioinspired materials can mimic the stem cell environment and modulate stem cell differentiation and proliferation. In this study, biomimetic…”
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Cooperation within von Willebrand factors enhances adsorption mechanism by Heidari, Maziar, Mehrbod, Mehrdad, Ejtehadi, Mohammad Reza, Mofrad, Mohammad R. K.

“…von Willebrand factor (VWF) is a naturally collapsed protein that participates in primary haemostasis and coagulation events. The clotting process is triggered…”
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The policy of agroforestry systems in Baneh forest, Northern Zagros by Maziar Heidari, Majid Lotfalian, Morteza Tashakori, Ahmad Valipour

“…Agroforestry is one of the most important forms of utilization in Zagros forests. In the present study, Gandoman, Mirhesam, and Kokh-e Mamo allotments located…”
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Electromagnetic Transients Simulation-Based Surrogate Models for Tolerance Analysis of FACTS Apparatus by Heidari, M., Filizadeh, S., Gole, A. M.

“…This paper introduces a computationally efficient surrogate model-based approach for tolerance analysis of power systems. Surrogate models are heuristic,…”
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Investigating the local utilization of forest in north Zagros (Case study: Baneh Region) by maziar Heidari, مجید لطفعلیان, morteza tashakori, Ahmad Valipour

“…DPSIR (Driver-Pressure-State-Impact-Response) is an analytical process, which is based on cause and effect relationship for making policy and management…”
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Dynamic Heterogeneity of Short Semi-crystalline Polymer Chains during Recrystallization by Heidari, Maziar, Labousse, Matthieu, Leibler, Ludwik

“…The instant crystallization of semi-crystalline polymers have become possible following the recent advances in Fast Scanning Calorimetry (FSC) and enables to…”
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Opportunities and threats in utilization of non-wood products in Baneh forests by Maziar Heidari, Majid Lotfalian, Morteza Tashakori, Ahmad Valipour

“…Non-wood forest products (NWFPs) and environmental values are preferred to woody products in Zagros forests. This study aimed to plan a utilization policy for…”
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