Search Results - "Materna, Stefan C."

Fast revascularization of the injured area is essential to support zebrafish heart regeneration by Marín-Juez, Rubén, Marass, Michele, Gauvrit, Sebastien, Rossi, Andrea, Lai, Shih-Lei, Materna, Stefan C., Black, Brian L., Stainier, Didier Y. R.

“…Zebrafish have a remarkable capacity to regenerate their heart. Efficient replenishment of lost tissues requires the activation of different cell types…”
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A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos by Materna, Stefan C., Davidson, Eric H.

“…In sea urchin embryos Delta signaling specifies non-skeletogenic mesoderm (NSM). Despite the identification of some direct targets, several aspects of Delta…”
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Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos by Materna, Stefan C., Ransick, Andrew, Li, Enhu, Davidson, Eric H.

“…Specification of the non-skeletogenic mesoderm (NSM) in sea urchin embryos depends on Delta signaling. Signal reception leads to expression of regulatory genes…”
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New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN by Li, Enhu, Materna, Stefan C., Davidson, Eric H.

“…The sea urchin oral ectoderm gene regulatory network (GRN) model has increased in complexity as additional genes are added to it, revealing its multiple…”
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Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo by Li, Enhu, Materna, Stefan C., Davidson, Eric H.

“…The Nodal signaling pathway is known from earlier work to be an essential mediator of oral ectoderm specification in the sea urchin embryo, and indirectly, of…”
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Notch and Nodal control forkhead factor expression in the specification of multipotent progenitors in sea urchin by Materna, Stefan C, Swartz, S Zachary, Smith, Joel

“…Indirect development, in which embryogenesis gives rise to a larval form, requires that some cells retain developmental potency until they contribute to the…”
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An arterial-specific enhancer of the human endothelin converting enzyme 1 (ECE1) gene is synergistically activated by Sox17, FoxC2, and Etv2 by Robinson, Ashley S, Materna, Stefan C, Barnes, Ralston M, De Val, Sarah, Xu, Shan-Mei, Black, Brian L

“…Endothelin-converting enzyme-1 (Ece-1), a crucial component of the Endothelin signaling pathway, is required for embryonic development and is an important…”
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High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development by Materna, Stefan C., Nam, Jongmin, Davidson, Eric H.

“…Accurate measurements of transcript abundance are a prerequisite to understand gene activity in development. Using the NanoString nCounter, an RNA counting…”
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Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus by Howard-Ashby, Meredith, Materna, Stefan C., Brown, C. Titus, Chen, Lili, Cameron, R. Andrew, Davidson, Eric H.

“…All genes encoding transcription factors of the bHLH, Nuclear Receptor, Basic Leucine Zipper, T-box, Smad, Sox, and other smaller families were identified in…”
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Using Morpholinos to Probe Gene Networks in Sea Urchin by Materna, Stefan C

“…The control processes that underlie the progression of development can be summarized in maps of gene regulatory networks (GRNs). A critical step in their…”
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High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution by Howard-Ashby, Meredith, Materna, Stefan C., Brown, C. Titus, Tu, Qiang, Oliveri, Paola, Cameron, R. Andrew, Davidson, Eric H.

“…A global scan of transcription factor usage in the sea urchin embryo was carried out in the context of the Strongylocentrotus purpuratus genome sequencing…”
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Cardiovascular development and survival require Mef2c function in the myocardial but not the endothelial lineage by Materna, Stefan C., Sinha, Tanvi, Barnes, Ralston M., Lammerts van Bueren, Kelly, Black, Brian L.

“…MEF2C is a member of the highly conserved MEF2 family of transcription factors and is a key regulator of cardiovascular development. In mice, Mef2c is…”
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Tissue-specific and endogenous protein labeling with split fluorescent proteins by Ligunas, Gloria D., Paniagua, German F., LaBelle, Jesselynn, Ramos-Martinez, Adela, Shen, Kyle, Gerlt, Emma H., Aguilar, Kaddy, Nguyen, Ngoc, Materna, Stefan C., Woo, Stephanie

“…The ability to label proteins by fusion with genetically encoded fluorescent proteins is a powerful tool for understanding dynamic biological processes…”
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A protocol for unraveling gene regulatory networks by Materna, Stefan C, Oliveri, Paola

“…Regulatory genes form large networks that are fundamental to the developmental program. The protocol presented here describes a general approach to assemble…”
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TAEL 2.0: An Improved Optogenetic Expression System for Zebrafish by LaBelle, Jesselynn, Ramos-Martinez, Adela, Shen, Kyle, Motta-Mena, Laura B, Gardner, Kevin H, Materna, Stefan C, Woo, Stephanie

“…Inducible gene expression systems are valuable tools for studying biological processes. We previously developed an optogenetic gene expression system called…”
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Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development by Howard-Ashby, Meredith, Materna, Stefan C., Brown, C. Titus, Chen, Lili, Cameron, R. Andrew, Davidson, Eric H.

“…A set of 96 homeobox transcription factors was identified in the Strongylocentrotus purpuratus genome using permissive blast searches with a large collection…”
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An injury-responsive mmp14b enhancer is required for heart regeneration by Zlatanova, Ivana, Sun, Fei, Wu, Roland S, Chen, Xiaoxin, Lau, Bryan H, Colombier, Pauline, Sinha, Tanvi, Celona, Barbara, Xu, Shan-Mei, Materna, Stefan C, Huang, Guo N, Black, Brian L

“…Mammals have limited capacity for heart regeneration, whereas zebrafish have extraordinary regeneration abilities. During zebrafish heart regeneration,…”
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The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development by Materna, Stefan C, Howard-Ashby, Meredith, Gray, Rachel F, Davidson, Eric H

“…The C2H2 zinc finger is one of the most abundant protein domains and is thought to have been extensively replicated in diverse animal clades. Some well-studied…”
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Logic of gene regulatory networks by Materna, Stefan C, Davidson, Eric H

“…Regulatory networks of transcription factors and signaling molecules lie at the heart of development. Their architecture implements logic functions whose…”
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An arterial-specific enhancer of the human endothelin converting enzyme1 (ECE1) gene is synergistically activated by Sox17, FoxC2, and Etv2 by Robinson, Ashley S., Materna, Stefan C., Barnes, Ralston M., De Val, Sarah, Xu, Shan-Mei, Black, Brian L.

“…Endothelin-converting enzyme-1 (Ece-1), a crucial component of the Endothelin signaling pathway, is required for embryonic development and is an important…”
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