Search Results - "Martorell Marugán, Jordi"

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    NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule by Requena, Francisco, Asenjo, Helena G., Barturen, Guillermo, Martorell-Marugán, Jordi, Carmona-Sáez, Pedro, Landeira, David

    Published in Scientific reports (31-05-2019)
    “…Recent technical advances highlight that to understand mammalian development and human disease we need to consider transcriptional and epigenetic cell-to-cell…”
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    Journal Article
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    MiRNA expression as outcome predictor in pediatric AML: systematic evaluation of a new model by Ellson, Ivan, Martorell-Marugán, Jordi, Carmona-Sáez, Pedro, Ramos-Mejia, Verónica

    Published in Npj genomic medicine (06-08-2024)
    “…Accurately predicting patient outcomes is essential for optimizing treatment and improving outcomes in pediatric acute myeloid leukemia (AML). In recent years,…”
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    Detecting Differentially Methylated Promoters in Genes Related to Disease Phenotypes Using R by Martorell-Marugán, Jordi, Carmona-Sáez, Pedro

    Published in Bio-protocol (05-06-2021)
    “…DNA methylation in gene promoters plays a major role in gene expression regulation, and alterations in methylation patterns have been associated with several…”
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    Protocol for large scale whole blood immune monitoring by mass cytometry and Cyto Quality Pipeline by Rybakowska, Paulina, Van Gassen, Sofie, Martorell Marugán, Jordi, Quintelier, Katrien, Saeys, Yvan, Alarcón-Riquelme, Marta E., Marañón, Concepción

    Published in STAR protocols (16-12-2022)
    “…Mass cytometry (MC) is a powerful large-scale immune monitoring technology. To maximize MC data quality, we present a protocol for whole blood analysis…”
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    DExMA: An R Package for Performing Gene Expression Meta-Analysis with Missing Genes by Villatoro-García, Juan Antonio, Martorell-Marugán, Jordi, Toro-Domínguez, Daniel, Román-Montoya, Yolanda, Femia, Pedro, Carmona-Sáez, Pedro

    Published in Mathematics (Basel) (01-09-2022)
    “…Meta-analysis techniques allow researchers to jointly analyse different studies to determine common effects. In the field of transcriptomics, these methods…”
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    mCSEA: detecting subtle differentially methylated regions by Martorell-Marugán, Jordi, González-Rumayor, Víctor, Carmona-Sáez, Pedro

    Published in Bioinformatics (15-09-2019)
    “…Abstract Motivation The identification of differentially methylated regions (DMRs) among phenotypes is one of the main goals of epigenetic analysis. Although…”
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    ImaGEO: integrative gene expression meta-analysis from GEO database by Toro-Domínguez, Daniel, Martorell-Marugán, Jordi, López-Domínguez, Raúl, García-Moreno, Adrián, González-Rumayor, Víctor, Alarcón-Riquelme, Marta E, Carmona-Sáez, Pedro

    Published in Bioinformatics (01-03-2019)
    “…Abstract Summary The Gene Expression Omnibus (GEO) database provides an invaluable resource of publicly available gene expression data that can be integrated…”
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    Exploring the interplay between climate, population immunity and SARS-CoV-2 transmission dynamics in Mediterranean countries by Villatoro-García, Juan Antonio, López-Domínguez, Raúl, Martorell-Marugán, Jordi, Luna, Juan de Dios, Lorente, José Antonio, Carmona-Sáez, Pedro

    Published in The Science of the total environment (01-11-2023)
    “…The relationship between SARS-CoV-2 transmission and environmental factors has been analyzed in numerous studies since the outbreak of the pandemic, resulting…”
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    A survey of gene expression meta-analysis: methods and applications by Toro-Domínguez, Daniel, Villatoro-García, Juan Antonio, Martorell-Marugán, Jordi, Román-Montoya, Yolanda, Alarcón-Riquelme, Marta E, Carmona-Sáez, Pedro

    Published in Briefings in bioinformatics (22-03-2021)
    “…Abstract The increasing use of high-throughput gene expression quantification technologies over the last two decades and the fact that most of the published…”
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    The SWI/SNF complex regulates the expression of miR-222, a tumor suppressor microRNA in lung adenocarcinoma by Peinado, Paola, Andrades, Alvaro, Martorell-Marugán, Jordi, Haswell, Jeffrey R, Slack, Frank J, Carmona-Sáez, Pedro, Medina, Pedro P

    Published in Human molecular genetics (16-11-2021)
    “…Abstract SWitch/Sucrose Non-Fermentable (SWI/SNF) chromatin remodeling complexes are key epigenetic regulators that are recurrently mutated in cancer. Most…”
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    DREIMT: a drug repositioning database and prioritization tool for immunomodulation by Troulé, Kevin, López-Fernández, Hugo, García-Martín, Santiago, Reboiro-Jato, Miguel, Carretero-Puche, Carlos, Martorell-Marugán, Jordi, Martín-Serrano, Guillermo, Carmona-Sáez, Pedro, Glez-Peña, Daniel, Al-Shahrour, Fátima, Gómez-López, Gonzalo

    Published in Bioinformatics (01-05-2021)
    “…Abstract Motivation Drug immunomodulation modifies the response of the immune system and can be therapeutically exploited in pathologies such as cancer and…”
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