Search Results - "Martins dos Santos, Vitor A. P."

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1 by Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei by Sloothaak, Jasper, Tamayo-Ramos, Juan Antonio, Odoni, Dorett I, Laothanachareon, Thanaporn, Derntl, Christian, Mach-Aigner, Astrid R, Martins Dos Santos, Vitor A P, Schaap, Peter J

“…Global climate change and fossil fuels limitations have boosted the demand for robust and efficient microbial factories for the manufacturing of bio-based…”
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More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes by van der Ark, Kees C H, van Heck, Ruben G A, Martins Dos Santos, Vitor A P, Belzer, Clara, de Vos, Willem M

“…The human gut is colonized with a myriad of microbes, with substantial interpersonal variation. This complex ecosystem is an integral part of the…”
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SyNDI: synchronous network data integration framework by Lindfors, Erno, van Dam, Jesse C J, Lam, Carolyn Ming Chi, Zondervan, Niels A, Martins Dos Santos, Vitor A P, Suarez-Diez, Maria

“…Systems biology takes a holistic approach by handling biomolecules and their interactions as big systems. Network based approach has emerged as a natural way…”
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Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness by Duman-üzdamar, Zeynep Efsun, Martins dos Santos, Vitor A. P, Hugenholtz, Jeroen, Suarez-Diez, Maria

“…Abstract Background The use of palm oil for our current needs is unsustainable. Replacing palm oil with oils produced by microbes through the conversion of…”
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Neochloris oleoabundans is worth its salt: Transcriptomic analysis under salt and nitrogen stress by de Jaeger, Lenny, Carreres, Benoit M, Springer, Jan, Schaap, Peter J, Eggink, Gerrit, Martins Dos Santos, Vitor A P, Wijffels, Rene H, Martens, Dirk E

“…Neochloris oleoabundans is an oleaginous microalgal species that can be cultivated in fresh water as well as salt water. Using salt water gives the opportunity…”
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Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential by Zondervan, Niels A, Martins Dos Santos, Vitor A P, Suarez-Diez, Maria, Saccenti, Edoardo

“…Staphylococcus and Streptococcus species can cause many different diseases, ranging from mild skin infections to life-threatening necrotizing fasciitis. Both…”
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The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics approach by Poblete-Castro, Ignacio, Escapa, Isabel F, Jäger, Christian, Puchalka, Jacek, Lam, Carolyn Ming Chi, Schomburg, Dietmar, Prieto, María Auxiliadora, Martins dos Santos, Vítor A P

“…Pseudomonas putida KT2442 is a natural producer of polyhydroxyalkanoates (PHAs), which can substitute petroleum-based non-renewable plastics and form the basis…”
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Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism by Sinha, Neeraj, van Schothorst, Evert M, Hooiveld, Guido J. E. J, Keijer, Jaap, Martins dos Santos, Vitor A. P, Suarez-Diez, Maria

“…Abstract Background Several computational methods have been developed that integrate transcriptomics data with genome-scale metabolic reconstructions to…”
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Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger by Sloothaak, Jasper, Odoni, Dorett I, Martins Dos Santos, Vitor A P, Schaap, Peter J, Tamayo-Ramos, Juan Antonio

“…The study of plant biomass utilization by fungi is a research field of great interest due to its many implications in ecology, agriculture and biotechnology…”
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Towards understanding Pseudomonas aeruginosa burn wound infections by profiling gene expression by Bielecki, Piotr, Glik, Justyna, Kawecki, Marek, Martins dos Santos, Vítor A. P

“…Pseudomonas aeruginosa is a key opportunistic pathogen causing severe acute and chronic nosocomial infections in immunocompromised or catheterized patients. It…”
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Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections by Jahagirdar, Sanjeevan, Morris, Lorna, Benis, Nirupama, Oppegaard, Oddvar, Svenson, Mattias, Hyldegaard, Ole, Skrede, Steinar, Norrby-Teglund, Anna, Martins Dos Santos, Vitor A P, Saccenti, Edoardo

“…Necrotising soft tissue infections (NSTIs) are rapidly progressing bacterial infections usually caused by either several pathogens in unison (polymicrobial…”
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Immunoglobulins drive terminal maturation of splenic dendritic cells by Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Pei, Gang, Gutierrez, Maximiliano Gabriel, Lienenklaus, Stefan, Hobeika, Elias, Reth, Michael, Santos, Vitor A. P. Martins dos, Krueger, Andreas, Weiss, Siegfried

“…Nature and physiological status of antigen-presenting cells, such as dendritic cells DCs, are decisive for the immune reactions elicited. Multiple factors and…”
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DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems by Smith, Robert W, van Rosmalen, Rik P, Martins Dos Santos, Vitor A P, Fleck, Christian

“…Models of metabolism are often used in biotechnology and pharmaceutical research to identify drug targets or increase the direct production of valuable…”
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D-Lactic Acid Production from Sugarcane Bagasse by Genetically Engineered Saccharomyces cerevisiae by Sornlek, Warasirin, Sae-Tang, Kittapong, Watcharawipas, Akaraphol, Wongwisansri, Sriwan, Tanapongpipat, Sutipa, Eurwilaichtr, Lily, Champreda, Verawat, Runguphan, Weerawat, Schaap, Peter J., Martins dos Santos, Vitor A. P.

“…Lactic acid (LA) is a promising bio-based chemical that has broad applications in food, nutraceutical, and bioplastic industries. However, production of the…”
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From correlation to causation: analysis of metabolomics data using systems biology approaches by Rosato, Antonio, Tenori, Leonardo, Cascante, Marta, De Atauri Carulla, Pedro Ramon, Martins dos Santos, Vitor A. P., Saccenti, Edoardo

“…Introduction Metabolomics is a well-established tool in systems biology, especially in the top–down approach. Metabolomics experiments often results in…”
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Understanding the antimicrobial mechanism of TiO2-based nanocomposite films in a pathogenic bacterium by Kubacka, Anna, Diez, María Suárez, Rojo, David, Bargiela, Rafael, Ciordia, Sergio, Zapico, Inés, Albar, Juan P., Barbas, Coral, Martins dos Santos, Vitor A. P., Fernández-García, Marcos, Ferrer, Manuel

“…Titania (TiO 2 )-based nanocomposites subjected to light excitation are remarkably effective in eliciting microbial death. However, the mechanism by which…”
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Identification of Aspergillus niger Aquaporins Involved in Hydrogen Peroxide Signaling by Laothanachareon, Thanaporn, Asin-Garcia, Enrique, Volkers, Rita J M, Tamayo-Ramos, Juan Antonio, Martins Dos Santos, Vitor A P, Schaap, Peter J

“…is a robust microbial cell factory for organic acid production. However, the regulation of many industrially important pathways is still poorly understood. The…”
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Efficient Reconstruction of Predictive Consensus Metabolic Network Models by van Heck, Ruben G A, Ganter, Mathias, Martins Dos Santos, Vitor A P, Stelling, Joerg

“…Understanding cellular function requires accurate, comprehensive representations of metabolism. Genome-scale, constraint-based metabolic models (GSMs) provide…”
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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis by Belda, Eugeni, van Heck, Ruben G. A., José Lopez-Sanchez, Maria, Cruveiller, Stéphane, Barbe, Valérie, Fraser, Claire, Klenk, Hans-Peter, Petersen, Jörn, Morgat, Anne, Nikel, Pablo I., Vallenet, David, Rouy, Zoé, Sekowska, Agnieszka, Martins dos Santos, Vitor A. P., de Lorenzo, Víctor, Danchin, Antoine, Médigue, Claudine

“…Summary By the time the complete genome sequence of the soil bacterium Pseudomonas putida KT2440 was published in 2002 (Nelson et al., ) this bacterium was…”
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