Search Results - "Martinek, Vlastimil"

Genomic benchmarks: a collection of datasets for genomic sequence classification by Grešová, Katarína, Martinek, Vlastimil, Čechák, David, Šimeček, Petr, Alexiou, Panagiotis

“…Recently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the protein folding…”
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RBP-Tar - a searchable database for experimental RBP binding sites [version 1; peer review: 2 approved with reservations] by Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

“…Background: RNA-binding proteins (RBPs) play a critical role in regulating gene expression by binding to specific sites on RNA molecules. Identifying these…”
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RBP-Tar - a searchable database for experimental RBP binding sites [version 3; peer review: 1 approved, 1 approved with reservations] by Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

“…Background RNA-binding proteins (RBPs) play a critical role in regulating gene expression by binding to specific sites on RNA molecules. Identifying these…”
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RBP-Tar - a searchable database for experimental RBP binding sites [version 2; peer review: 2 approved with reservations] by Gresova, Katarina, Racek, Tomas, Martinek, Vlastimil, Cechak, David, Svobodova, Radka, Alexiou, Panagiotis

“…Background: RNA-binding proteins (RBPs) play a critical role in regulating gene expression by binding to specific sites on RNA molecules. Identifying these…”
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Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics by Martinek, Vlastimil, Martin, Jessica, Belair, Cedric, Payea, Matthew J, Malla, Sulochan, Alexiou, Panagiotis, Maragkakis, Manolis

“…Abstract In eukaryotes, genes produce a variety of distinct RNA isoforms, each with potentially unique protein products, coding potential or regulatory signals…”
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Calc-X and Calcformers: Empowering Arithmetical Chain-of-Thought through Interaction with Symbolic Systems by Kadlčík, Marek, Štefánik, Michal, Sotolář, Ondřej, Martinek, Vlastimil

“…Despite outstanding performance in many tasks, language models are notoriously inclined to make factual errors in tasks requiring arithmetic computation. We…”
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